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BaseInfo

ncRNA ID	novel_zma_miR3587
Species	Zea mays
Class	miRNA
Genome position	Chr8:160237494-160237596 [-]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287159;SRR2089703;SRR2089707;SRR2089708
Length	23
Mature sequence(if miRNA)	81 - GGAGGGGAUUGGAGUGGCUAAAA - 103
Stem-loop(if miRNA)	--    G              A           UAAAGGG  UG   -  UUAC   GGAG GGAUUGGAGUGGCU AAAUCCCCUUU       CU  UUC GG    A   |||| |||||||||||||| |||||||||||       ||  ||| ||   CCUC CCUAACCUCACUGA UUUAGGGGAGG       GA  GAG CC    C AG    A              C           ----UUA  GU   A  UAAC
Stem-loop sequence	GGAGGGGAUUGGAGUGGCUAAAAUCCCCUUUUAAAGGGCUUGUUCGGUUACACCAAUCCAGAGUGAGAUUGGAGGGGAUUUCAGUCACUCCAAUCCACUCCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539411.1	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   ||||||||*|||||||||||||| targets:3497   UUUUAGCCCCUCCAAUCCCCUCC   3519 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   ||||||||*|||||||||||||| targets:3532   UUUUAGCCCCUCCAAUCCCCUCC   3554 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ235519.1	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   ||||||||*|||||||=|||||| targets:71   UUUUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	2.5	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
JB163850.1	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   ||||||||*|||||||=|||||| targets:71   UUUUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	2.5	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
HI403389.1	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   ||||||||*|||||||=|||||| targets:71   UUUUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	2.5	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   ||||||||*|||=|||||||||| targets:199   UUUUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	2.5	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
HI405820.1	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   ||||||||*|||=|||||||||| targets:199   UUUUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	2.5	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
JB166281.1	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   ||||||||*|||=|||||||||| targets:199   UUUUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	2.5	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   ||||||||*||=||||||||||| targets:1110   UUUUAGCCCCUUCAAUCCCCUCC   1132 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
BT017648.1	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   |||*||||*|||||||||||||| targets:164   UUUAAGCCUCUCCAAUCCCCUCC   186 Target Full Sequence	1.0	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
BT065170.1	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   |||||*||*|||||||||||||| targets:681   UUUUAUCCCCUCCAAUCCCCUCC   703 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   |||||*||*|||||||||||||| targets:1561   UUUUAUCCCCUCCAAUCCCCUCC   1583 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   |||||*||*|||||||||||||| targets:1581   UUUUAUCCCCUCCAAUCCCCUCC   1603 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   |||||*||*|||||||||||||| targets:1605   UUUUAUCCCCUCCAAUCCCCUCC   1627 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   |||||*||*|||||||||||||| targets:1638   UUUUAUCCCCUCCAAUCCCCUCC   1660 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
AY108273.1	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   **||||||*|||||||||||||= targets:329   GCUUAGCCCCUCCAAUCCCCUCU   351 Target Full Sequence	2.0	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   *||||*||*|||||||||||||| targets:1028   CUUUAACCCCUCCAAUCCCCUCC   1050 Target Full Sequence	2.0	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:23   AAAAUCGGUGAGGUUAGGGGAGG   1   ||*|||||*|||||||||*|||| targets:215   UUCUAGCCCCUCCAAUCCACUCC   237 Target Full Sequence	2.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget