Search result

BaseInfo

ncRNA ID novel_zma_miR3586
Species Zea mays
Class miRNA
Genome position Chr8:165264602-165264654 [-]
Reference genome RefGen_v4
Source SRR2287031;SRR2287159;SRR2287161;SRR2287163;SRR5451005
Length 24
Mature sequence(if miRNA) 1 - AUUGGAGGGGAUUGAUACAGAUUG - 24
Stem-loop(if miRNA) --      - UG   A          A
  GUUUGU U  GUU UUUUCAAUCC U
  |||||| |  ||| ||||||||||
  UAGACA A  UAG GGAGGUUAGG A
GU      U GU   G          U
Stem-loop sequence GUUUGUUUGGUUAUUUUCAAUCCAUAUGGAUUGGAGGGGAUUGAUACAGAUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008658561.2
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*||||||||||||||||||
targets:292   CAAUCCGUAUCAAUCCCCUCCAAU   315

1.0 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*||||||||||||||||||
targets:1971   CAAUCCGUAUCAAUCCCCUCCAAU   1994

1.0 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*||||||||||||||||||
targets:1971   CAAUCCGUAUCAAUCCCCUCCAAU   1994

1.0 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_020545207.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*||||||||||||||||||
targets:13   CAAUCCGUAUCAAUCCCCUCCAAU   36

1.0 PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA NA coding protein psRNATarget
XM_020539810.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*||||||||||||||||||
targets:690   CAAUCCGUAUCAAUCCCCUCCAAU   713

1.0 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
BT055069.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*|||||||||||||=||||
targets:967   CAAUCCGUAUCAAUCCCCUUCAAU   990

2.5 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
EU956568.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  =||||*||||||||||||||||||
targets:1621   UAAUCCGUAUCAAUCCCCUCCAAU   1644

1.0 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
BT041454.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*|||||||||||||=||||
targets:1488   CAAUCCGUAUCAAUCCCCUUCAAU   1511

2.5 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*|||||||||||||=||||
targets:1488   CAAUCCGUAUCAAUCCCCUUCAAU   1511

2.5 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
AY105910.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*|||||||||||||=||||
targets:1474   CAAUCCGUAUCAAUCCCCUUCAAU   1497

2.5 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
BT040193.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*|||||||||||||=||||
targets:1456   CAAUCCGUAUCAAUCCCCUUCAAU   1479

2.5 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
BT064472.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*|||||||||||||=||||
targets:1412   CAAUCCGUAUCAAUCCCCUUCAAU   1435

2.5 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT055467.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*|||||||||||||||=||
targets:1076   CAAUCCGUAUCAAUCCCCUCCGAU   1099

2.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
BT055467.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*||||=|||||||||||||
targets:1189   CAAUCCGUAUUAAUCCCCUCCAAU   1212

2.0 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*|||||||||||||||=||
targets:1038   CAAUCCGUAUCAAUCCCCUCCGAU   1061

2.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*||||=|||||||||||||
targets:1151   CAAUCCGUAUUAAUCCCCUCCAAU   1174

2.0 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
EU953075.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*|||||||||=||||||||
targets:999   CAAUCCGUAUCAAUCUCCUCCAAU   1022

2.5 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
BT064935.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*|||||||||||=||||||
targets:827   CAAUCCGUAUCAAUCCCUUCCAAU   850

2.5 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
EU972046.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*||||||||||||||=|||
targets:775   CAAUCCGUAUCAAUCCCCUCUAAU   798

2.5 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||**|||||||||||||||||
targets:908   CAAUCCAUAUCAAUCCCCUCCAAU   931

2.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
EU965203.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*|||||||||*||||||||
targets:879   CAAUCCGUAUCAAUCACCUCCAAU   902

2.5 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
NM_001156482.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||*|||||||||*||||||||
targets:879   CAAUCCGUAUCAAUCACCUCCAAU   902

2.5 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
EU959345.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||**|||||||||||||||||
targets:836   CAAUCCAUAUCAAUCCCCUCCAAU   859

2.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||**|||||||||||||||||
targets:835   CAAUCCAUAUCAAUCCCCUCCAAU   858

2.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959055.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||**|||||||||||||||||
targets:837   CAAUCCAUAUCAAUCCCCUCCAAU   860

2.0 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
BT062922.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||**|||||||||||||||||
targets:889   CAAUCCAUAUCAAUCCCCUCCAAU   912

2.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  |||||**|||||||||||||||||
targets:436   CAAUCCAUAUCAAUCCCCUCCAAU   459

2.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
EU959053.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  ||**|**|||||||||||||||||
targets:835   CAMYCCAUAUCAAUCCCCUCCAAU   858

2.0 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
XM_008649902.2
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  =|||=|*|*||||||||||||||*
targets:1671   UAAUUUCUCUCAAUCCCCUCCAAC   1694

3.0 PREDICTED: Zea mays Electron carrier/ iron ion binding protein (cl22526_1), transcript variant X1, mRNA NA coding protein psRNATarget
BT067571.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  =|||=|*|*||||||||||||||*
targets:1628   UAAUUUCUCUCAAUCCCCUCCAAC   1651

3.0 Zea mays full-length cDNA clone ZM_BFc0088A12 mRNA, complete cds NA coding protein psRNATarget
BT064254.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  =|||=|*|*||||||||||||||*
targets:1641   UAAUUUCUCUCAAUCCCCUCCAAC   1664

3.0 Zea mays full-length cDNA clone ZM_BFc0153A19 mRNA, complete cds NA coding protein psRNATarget
NM_001349063.1
ncRNA:24   GUUAGACAUAGUUAGGGGAGGUUA   1
  =|||=|*|*||||||||||||||*
targets:1641   UAAUUUCUCUCAAUCCCCUCCAAC   1664

3.0 Zea mays Electron carrier/ iron ion binding protein (cl22526_1), mRNA NA coding protein psRNATarget
BT088155.1
ncRNA:24   GUUA--GACAUAGUUAGGGGAGGUUA   1
  =|||--||*|*|||||||||||||||
targets:1458   UAAUUUCUCUCUCAAUCCCCUCCAAU   1483

2.0 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.