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BaseInfo

ncRNA ID	novel_zma_miR3581
Species	Zea mays
Class	miRNA
Genome position	Chr8:177143437-177143594 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287159;SRR2287162;SRR2287163;SRR2287164;SRR2287165;SRR3341856
Length	21
Mature sequence(if miRNA)	138 - UCUAAAGUUUGGAGGGGAAAA - 158
Stem-loop(if miRNA)	--                 U         --        AUAAA      A   ------A U     -----     UACCUC    A   UUCUCCUCUAAGCUUUA AGCUCUAAA  CUUUAGAG     GCUUUA GCA       G GUUCU     GAGGU      UCUA A   ||||||||||||||||| |||||||||  ||||||||     |||||| |||       | |||||     |||||      |||| C   AAGGGGAGGUUUGAAAU UCGAGAUUU  GAAAUCUC     UGAAAU CGU       C CGAGA     CUCCA      AGAU U AA                 C         UC        ----G      -   GUGAAAA U     UUAUA     ---CCC    C
Stem-loop sequence	UUCUCCUCUAAGCUUUAUAGCUCUAAACUUUAGAGAUAAAGCUUUAAGCAAGUGUUCUGAGGUUACCUCUCUAAACUCUAGACCCACCUCAUAUUAGAGCUCAAAAGUGUGCUAAAGUGCUCUAAAGCUUUUAGAGCUCUAAAGUUUGGAGGGGAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT066877.1	ncRNA:21   AAAAGGGGAGGUUUGAAAUCU   1   ***|||||||||||||||||| targets:2169   GGAUCCCCUCCAAACUUUAGA   2189 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0084O07 mRNA, complete cds	NA	coding protein	psRNATarget
BT037351.1	ncRNA:21   AAAAGGGGAGGUUUGAAAUCU   1   ***|||||||||||||||||| targets:1633   GGAUCCCCUCCAAACUUUAGA   1653 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0165H09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143190.1	ncRNA:21   AAAAGGGGAGGUUUGAAAUCU   1   ***|||||||||||||||||| targets:1633   GGAUCCCCUCCAAACUUUAGA   1653 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100216791), mRNA	NA	coding protein	psRNATarget
NM_001149980.1	ncRNA:21   AAAAGGGGAGGUUUGAAAUCU   1   ***|||||||||||||||||| targets:1601   GGAUCCCCUCCAAACUUUAGA   1621 Target Full Sequence	1.0	Zea mays uncharacterized LOC100276109 (LOC100276109), mRNA	NA	coding protein	psRNATarget
EU960071.1	ncRNA:21   AAAAGGGGAGGUUUGAAAUCU   1   ***|||||||||||||||||| targets:1601   GGAUCCCCUCCAAACUUUAGA   1621 Target Full Sequence	1.0	Zea mays clone 221586 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU944950.1	ncRNA:21   AAAAGGGGAGGUUUGAAAUCU   1   ***|||||||||||||||||| targets:827   GGAUCCCCUCCAAACUUUAGA   847 Target Full Sequence	1.0	Zea mays clone 236056 mRNA sequence	NA	coding protein	psRNATarget
BT038154.1	ncRNA:21   AAAAGGGGAGGUUUGAAAUCU   1   ***|||||||||||||||||| targets:155   GGAUCCCCUCCAAACUUUAGA   175 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0214O03 mRNA, complete cds	NA	coding protein	psRNATarget