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BaseInfo

ncRNA ID	novel_zma_miR3579
Species	Zea mays
Class	miRNA
Genome position	Chr8:167545904-167546077 [+]
Reference genome	RefGen_v4
Source	SRR2287031
Length	24
Mature sequence(if miRNA)	151 - AGAGUGUAGUUUGAAUAUUGGUAU - 174
Stem-loop(if miRNA)	--   C                   C  -       AAUCUACAAC   AAAUUGUGCAAAAGAUGUUUCUGGUGGUGAACAUAUGGGUGA   ACC AUAUUCAAACUACAUUCUA AA GCAGUAC          GCA                                          A   ||| ||||||||||||||||||| || |||||||          |||   UGG UAUAAGUUUGAUGUGAGAU UU CGUUAUG          CGU                                          C UA   U                   A  A       -------CUA   UUUGCCACAAAAAAUCAUUGGUAUAUCCACGUUACAUGUCAU
Stem-loop sequence	ACCCAUAUUCAAACUACAUUCUACAAGCAGUACAAUCUACAACGCAAAAUUGUGCAAAAGAUGUUUCUGGUGGUGAACAUAUGGGUGAACUACUGUACAUUGCACCUAUAUGGUUACUAAAAAACACCGUUUUGCAUCGUAUUGCAUUAUAGAGUGUAGUUUGAAUAUUGGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU973003.1	ncRNA:24   UAUGGUUAUAAGUUUGAUGUGAGA   1   ||||=*||||||||||||=||||| targets:1058   AUACUCAUAUUCAAACUAUACUCU   1081 Target Full Sequence	2.5	Zea mays clone 391534 DNA-3-methyladenine glycosylase 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158478.1	ncRNA:24   UAUGGUUAUAAGUUUGAUGUGAGA   1   ||||=*||||||||||||=||||| targets:1058   AUACUCAUAUUCAAACUAUACUCU   1081 Target Full Sequence	2.5	Zea mays DNA-3-methyladenine glycosylase 1 (LOC100285587), mRNA	NA	coding protein	psRNATarget
AY111693.1	ncRNA:24   UAUGGUUAUAAGUUUGAUGUGAGA   1   |||||*|||||||||||*|||||| targets:1001   AUACCCAUAUUCAAACUUCACUCU   1024 Target Full Sequence	2.5	Zea mays CL6746_1 mRNA sequence	NA	coding protein	psRNATarget
BT086112.1	ncRNA:24   UAUGGUUAUAAGUUUGAUGUGAGA   1   |||==*|||||||||*|||||||| targets:1878   AUAUUCAUAUUCAAAGUACACUCU   1901 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0117E24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551216.1	ncRNA:24   UAUGGUUAUAAGUUUGAUGUGAGA   1   =|*=|*|||||||||||*|||||| targets:695   GUCUCUAUAUUCAAACUUCACUCU   718 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109945364 (LOC109945364), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020551215.1	ncRNA:24   UAUGGUUAUAAGUUUGAUGUGAGA   1   =|*=|*|||||||||||*|||||| targets:695   GUCUCUAUAUUCAAACUUCACUCU   718 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109945364 (LOC109945364), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551217.1	ncRNA:24   UAUGGUUAUAAGUUUGAUGUGAGA   1   =|*=|*|||||||||||*|||||| targets:695   GUCUCUAUAUUCAAACUUCACUCU   718 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109945364 (LOC109945364), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT069972.1	ncRNA:24   UAUGGUUAUAAGUUUGAUGUGAGA   1   =|*|=*|||||||||||*|||||| targets:254   GUUCUUAUAUUCAAACUUCACUCU   277 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0336K21 mRNA, complete cds	NA	coding protein	psRNATarget