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BaseInfo

ncRNA ID	novel_zma_miR3574
Species	Zea mays
Class	miRNA
Genome position	Chr7:37828075-37828174 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287162
Length	24
Mature sequence(if miRNA)	1 - AGAUUGGAGUGGAUUGAGGUGGUA - 24
Stem-loop(if miRNA)	--A                    GUAUAA  U         U    UAUG    GAUUGGAGUGGAUUGAGGUG      GG GUAUUGAAG GUAA    A    ||||||||||||||||||||      || ||||||||| ||||    A    CUGAUUUCACCUAACUUCAC      UC CAUAACUUU UAUU    C UCC                    AUAAAA  -         C    UAAU
Stem-loop sequence	AGAUUGGAGUGGAUUGAGGUGGUAUAAGGUGUAUUGAAGUGUAAUAUGAACUAAUUUAUCUUUCAAUACCUAAAAUACACUUCAAUCCACUUUAGUCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238263.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||||||||||||||||||||||* targets:85   UACCACCUCAAUCCACUCCAAUCC   108 Target Full Sequence	1.0	Sequence 4258 from Patent EP2985353	NA	coding protein	psRNATarget
HI406133.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||||||||||||||||||||||* targets:85   UACCACCUCAAUCCACUCCAAUCC   108 Target Full Sequence	1.0	Sequence 4258 from Patent EP2074227	NA	coding protein	psRNATarget
JB166594.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||||||||||||||||||||||* targets:85   UACCACCUCAAUCCACUCCAAUCC   108 Target Full Sequence	1.0	Sequence 4258 from Patent EP2559767	NA	coding protein	psRNATarget
EU943240.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||||||||||||||||||||||* targets:572   UACCACCUCAAUCCACUCCAAUCC   595 Target Full Sequence	1.0	Zea mays clone 1589496 mRNA sequence	NA	coding protein	psRNATarget
EU965489.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||||||||||||||||||||||* targets:1110   UACCACCUCAAUCCACUCCAAUCC   1133 Target Full Sequence	1.0	Zea mays clone 286392 mRNA sequence	NA	coding protein	psRNATarget
XM_008667020.2	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||||||||||||||||||||||* targets:2079   UACCACCUCAAUCCACUCCAAUCC   2102 Target Full Sequence	1.0	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103643852), mRNA	NA	coding protein	psRNATarget
EU960447.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   ||||||||||||||||||||||** targets:1214   UACCACCUCAAUCCACUCCAAUAA   1237 Target Full Sequence	2.5	Zea mays clone 224969 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150023.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   ||||||||||||||||||||||** targets:1214   UACCACCUCAAUCCACUCCAAUAA   1237 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276173 (LOC100276173), mRNA	NA	coding protein	psRNATarget
XM_008681984.2	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||-|=|||||||||||=|||||| targets:1333   UAC-AUCUCAAUCCACUUCAAUCU   1355 Target Full Sequence	2.5	PREDICTED: Zea mays caleosin (LOC100285543), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY111447.2	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||-|=|||||||||||||||||* targets:351   UAC-AUCUCAAUCCACUCCAAUCC   373 Target Full Sequence	2.0	Zea mays CL859_2 mRNA sequence	NA	coding protein	psRNATarget
BT067545.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||-|=|||||||||||||||||* targets:1767   UAC-AUCUCAAUCCACUCCAAUCC   1789 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0086J10 mRNA, complete cds	NA	coding protein	psRNATarget
BT034601.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||-|=|||||||||||||||||* targets:1948   UAC-AUCUCAAUCCACUCCAAUCC   1970 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0002L05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137799.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||-|=|||||||||||||||||* targets:1948   UAC-AUCUCAAUCCACUCCAAUCC   1970 Target Full Sequence	2.0	Zea mays putative protein kinase superfamily protein (LOC100192584), mRNA	NA	coding protein	psRNATarget
XM_020549588.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||-|=|||||||||||||||||* targets:1429   UAC-AUCUCAAUCCACUCCAAUCA   1451 Target Full Sequence	2.0	PREDICTED: Zea mays major facilitator superfamily defense 1 (mfsd1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548088.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||-|||||||||||||=|||||* targets:5050   UAC-ACCUCAAUCCACUUCAAUCC   5072 Target Full Sequence	2.5	PREDICTED: Zea mays probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (LOC103648345), mRNA	NA	coding protein	psRNATarget
XM_008671926.2	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |*|=||||||||||*||||||||| targets:1065   UCCUACCUCAAUCCUCUCCAAUCU   1088 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103647382), mRNA	NA	coding protein	psRNATarget
LQ237989.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||-|==||||||||||||||||* targets:87   UAC-AUUUCAAUCCACUCCAAUCC   109 Target Full Sequence	3.0	Sequence 3984 from Patent EP2985353	NA	coding protein	psRNATarget
JB166320.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||-|==||||||||||||||||* targets:87   UAC-AUUUCAAUCCACUCCAAUCC   109 Target Full Sequence	3.0	Sequence 3984 from Patent EP2559767	NA	coding protein	psRNATarget
HI405859.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||-|==||||||||||||||||* targets:87   UAC-AUUUCAAUCCACUCCAAUCC   109 Target Full Sequence	3.0	Sequence 3984 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |*||||||||||||*||||||||* targets:2428   UUCCACCUCAAUCCUCUCCAAUCC   2451 Target Full Sequence	2.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
XM_008667123.2	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   ***=|||||||||||||||||||* targets:2375   CUGUACCUCAAUCCACUCCAAUCC   2398 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667124.2	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   ***=|||||||||||||||||||* targets:2397   CUGUACCUCAAUCCACUCCAAUCC   2420 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |*=|||||||||||*||||||||* targets:74   UUUCACCUCAAUCCCCUCCAAUCC   97 Target Full Sequence	2.5	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |*=|||||||||||*||||||||* targets:40   UUUCACCUCAAUCCCCUCCAAUCC   63 Target Full Sequence	2.5	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   **||*|=||||||||||||||||* targets:3910   AUCCCCUUCAAUCCACUCCAAUCC   3933 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT060604.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||-|=*||||||||||||||||* targets:574   UAC-AUGUCAAUCCACUCCAAUCC   596 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0022G03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674068.2	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   |||-|=*||||||||||||||||* targets:641   UAC-AUGUCAAUCCACUCCAAUCC   663 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC100217088), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   **||*|||||||||*||||||||* targets:31   AUCCCCCUCAAUCCCCUCCAAUCC   54 Target Full Sequence	2.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   **||*|||||||||*||||||||* targets:31   AUCCCCCUCAAUCCCCUCCAAUCC   54 Target Full Sequence	2.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AUGGUGGAGUUAGGUGAGGUUAGA   1   **||*|||||||||*||||||||* targets:31   AUCCCCCUCAAUCCCCUCCAAUCC   54 Target Full Sequence	2.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget