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BaseInfo

ncRNA ID novel_zma_miR3572
Species Zea mays
Class miRNA
Genome position Chr7:1985030-1985138 [-]
Reference genome RefGen_v4
Source SRR2287031
Length 24
Mature sequence(if miRNA) 1 - ACUAAAAUGGAAUAAAACGUAGGG - 24
Stem-loop(if miRNA) -   - A         U       AUAU      UU                  
 CUU C UUUUAUUCC UUUUAGU    AAAUUG  AAAUAUAGAAACUAAAAUA
 ||| | ||||||||| |||||||    ||||||  ||||||||||||||||||A
 GGA G AAAAUAAGG AAAAUCA    UUUAAU  UUUAUAUCUUUGAUUUUGA
G   U C         U       AGAU      GG                  
Stem-loop sequence CUUCAUUUUAUUCCUUUUUAGUAUAUAAAUUGUUAAAUAUAGAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUGGUAAUUUUAGAACUAAAAUGGAAUAAAACGUAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542840.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||||*|||||||||||||||||
targets:1002   CCCUACAUUUUAUUCCAUUUUAGU   1025

1.0 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001112512.2
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||||*||||||||=||||||||
targets:1574   CCCUACAUUUUAUUCUAUUUUAGU   1597

2.5 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
NM_001112512.2
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*||||||||=||||||||
targets:1671   CCCUUCAUUUUAUUCUAUUUUAGU   1694

2.5 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |=||||*|||||||||||||||||
targets:845   CUCUACAUUUUAUUCCAUUUUAGU   868

1.0 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |=||||*|||||||||||||||||
targets:845   CUCUACAUUUUAUUCCAUUUUAGU   868

1.0 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  =|||||*|||||||||||||||||
targets:582   UCCUACAUUUUAUUCCAUUUUAGU   605

1.0 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
EZ060524.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||||*||||||||=||||||||
targets:74   CCCUACAUUUUAUUCUAUUUUAGU   97

2.5 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
XM_008657966.2
ncRNA:23   GGAUGCAAAAUAAGGUAAAAUCA   1
  |||||*||||||||=||||||||
targets:1   CCUACAUUUUAUUCUAUUUUAGU   23

2.5 PREDICTED: Zea mays uncharacterized LOC103635535 (LOC103635535), transcript variant X1, mRNA NA coding protein psRNATarget
BT063047.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||||||||||
targets:2102   CCCUUCAUUUUAUUCCAUUUUAGU   2125

1.0 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
NM_001174830.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||||||||||
targets:2102   CCCUUCAUUUUAUUCCAUUUUAGU   2125

1.0 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
XM_008660555.2
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||||*||||||||||*||||||
targets:1920   CCCUACAUUUUAUUCCACUUUAGU   1943

2.5 PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA NA coding protein psRNATarget
BT019141.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||||||||||
targets:297   CCCUCCAUUUUAUUCCAUUUUAGU   320

1.0 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
EZ052166.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |||||**|||||||||||||||||
targets:782   CCCUAGAUUUUAUUCCAUUUUAGU   805

2.0 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
JB167174.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||||||||||
targets:172   CCCUCCAUUUUAUUCCAUUUUAGU   195

1.0 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
HI406713.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||||||||||
targets:172   CCCUCCAUUUUAUUCCAUUUUAGU   195

1.0 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||||||||||
targets:172   CCCUCCAUUUUAUUCCAUUUUAGU   195

1.0 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
JB163513.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||||||||||
targets:32   CCCUUCAUUUUAUUCCAUUUUAGU   55

1.0 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
LQ235182.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||||||||||
targets:32   CCCUUCAUUUUAUUCCAUUUUAGU   55

1.0 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
HI403052.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||||||||||
targets:32   CCCUUCAUUUUAUUCCAUUUUAGU   55

1.0 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
LQ238549.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||||||||||
targets:81   CCCUCCAUUUUAUUCCAUUUUAGU   104

1.0 Sequence 4544 from Patent EP2985353 NA coding protein psRNATarget
HI406419.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||||||||||
targets:81   CCCUCCAUUUUAUUCCAUUUUAGU   104

1.0 Sequence 4544 from Patent EP2074227 NA coding protein psRNATarget
JB166880.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||||||||||
targets:81   CCCUCCAUUUUAUUCCAUUUUAGU   104

1.0 Sequence 4544 from Patent EP2559767 NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |=||*|*|||||||||||||||||
targets:2154   CUCUCCAUUUUAUUCCAUUUUAGU   2177

1.0 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
EU957896.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||=|||*||||||||||*||||||
targets:1273   CCUUACAUUUUAUUCCACUUUAGU   1296

2.5 Zea mays clone 1630391 mRNA sequence NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*||||||||=||||||||
targets:841   CCCUUCAUUUUAUUCUAUUUUAGU   864

2.5 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
HI403041.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*||||=||||||||||||
targets:32   CCCUUCAUUUUGUUCCAUUUUAGU   55

2.5 Sequence 1166 from Patent EP2074227 NA coding protein psRNATarget
LQ235171.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*||||=||||||||||||
targets:32   CCCUUCAUUUUGUUCCAUUUUAGU   55

2.5 Sequence 1166 from Patent EP2985353 NA coding protein psRNATarget
JB163516.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*||||||||=||||||||
targets:32   CCCUUCAUUUUAUUCUAUUUUAGU   55

2.5 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
JB163502.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*||||=||||||||||||
targets:32   CCCUUCAUUUUGUUCCAUUUUAGU   55

2.5 Sequence 1166 from Patent EP2559767 NA coding protein psRNATarget
LQ235185.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*||||||||=||||||||
targets:32   CCCUUCAUUUUAUUCUAUUUUAGU   55

2.5 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
HI403055.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*||||||||=||||||||
targets:32   CCCUUCAUUUUAUUCUAUUUUAGU   55

2.5 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
HI403050.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*||||||||=||||||||
targets:32   CCCUUCAUUUUAUUCUAUUUUAGU   55

2.5 Sequence 1175 from Patent EP2074227 NA coding protein psRNATarget
LQ235180.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*||||||||=||||||||
targets:32   CCCUUCAUUUUAUUCUAUUUUAGU   55

2.5 Sequence 1175 from Patent EP2985353 NA coding protein psRNATarget
JB163511.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*||||||||=||||||||
targets:32   CCCUUCAUUUUAUUCUAUUUUAGU   55

2.5 Sequence 1175 from Patent EP2559767 NA coding protein psRNATarget
JB170741.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  =|||*|*||||=||||||||||||
targets:8   UCCUUCAUUUUGUUCCAUUUUAGU   31

2.5 Sequence 8405 from Patent EP2559767 NA coding protein psRNATarget
HI410280.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  =|||*|*||||=||||||||||||
targets:8   UCCUUCAUUUUGUUCCAUUUUAGU   31

2.5 Sequence 8405 from Patent EP2074227 NA coding protein psRNATarget
LQ242410.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  =|||*|*||||=||||||||||||
targets:8   UCCUUCAUUUUGUUCCAUUUUAGU   31

2.5 Sequence 8405 from Patent EP2985353 NA coding protein psRNATarget
HI406932.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |=||*|||*||||||=||||||||
targets:11   CUCUUCGUGUUAUUCUAUUUUAGU   34

2.5 Sequence 5057 from Patent EP2074227 NA coding protein psRNATarget
LQ239062.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |=||*|||*||||||=||||||||
targets:11   CUCUUCGUGUUAUUCUAUUUUAGU   34

2.5 Sequence 5057 from Patent EP2985353 NA coding protein psRNATarget
JB167393.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |=||*|||*||||||=||||||||
targets:11   CUCUUCGUGUUAUUCUAUUUUAGU   34

2.5 Sequence 5057 from Patent EP2559767 NA coding protein psRNATarget
XM_008647122.2
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*||||||||||*||||||
targets:2992   CCCUCCAUUUUAUUCCACUUUAGU   3015

2.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647123.2
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*||||||||||*||||||
targets:2603   CCCUCCAUUUUAUUCCACUUUAGU   2626

2.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651702.2
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*||||||||||*||||||
targets:485   CCCUCCAUUUUAUUCCACUUUAGU   508

2.5 PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA NA coding protein psRNATarget
BT066057.2
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ***||=|*||||||||||||||||
targets:861   AAAUAUGAUUUAUUCCAUUUUAGU   884

2.0 Zea mays full-length cDNA clone ZM_BFb0211I17 mRNA, complete cds NA coding protein psRNATarget
EU956227.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||*|||||||
targets:1272   CCCUUCAUUUUAUUCCUUUUUAGU   1295

2.5 Zea mays clone 1559264 mRNA sequence NA coding protein psRNATarget
EU942443.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||*|||||||
targets:495   CCCUUCAUUUUAUUCCUUUUUAGU   518

2.5 Zea mays clone 1501876 mRNA sequence NA coding protein psRNATarget
EU945607.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|**||||||||||||||||
targets:146   CCCUCCAAUUUAUUCCAUUUUAGU   169

2.0 Zea mays clone 279279 mRNA sequence NA coding protein psRNATarget
JB167682.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||*|||||||
targets:12   CCCUUCAUUUUAUUCCUUUUUAGU   35

2.5 Sequence 5346 from Patent EP2559767 NA coding protein psRNATarget
HI407221.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||*|||||||
targets:12   CCCUUCAUUUUAUUCCUUUUUAGU   35

2.5 Sequence 5346 from Patent EP2074227 NA coding protein psRNATarget
LQ239351.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||||*|*|||||||||*|||||||
targets:12   CCCUUCAUUUUAUUCCUUUUUAGU   35

2.5 Sequence 5346 from Patent EP2985353 NA coding protein psRNATarget
NM_001320812.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |*||*|*|||||||=|||||||||
targets:2403   CGCUUCAUUUUAUUUCAUUUUAGU   2426

2.5 Zea mays Protein HAPLESS 2 (LOC100274016), mRNA NA coding protein psRNATarget
XM_008669344.2
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |*||*|*|||||||=|||||||||
targets:2049   CGCUUCAUUUUAUUUCAUUUUAGU   2072

2.5 PREDICTED: Zea mays Protein HAPLESS 2 (LOC100274016), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547858.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |||**|*||||||||=||||||||
targets:1571   CCCAUCAUUUUAUUCUAUUUUAGU   1594

2.5 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001148401.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |*||*|*|||||||=|||||||||
targets:1921   CGCUUCAUUUUAUUUCAUUUUAGU   1944

2.5 Zea mays Protein HAPLESS 2 (LOC100274016), mRNA NA coding protein psRNATarget
BT061735.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |*||*|*|||||||=|||||||||
targets:1921   CGCUUCAUUUUAUUUCAUUUUAGU   1944

2.5 Zea mays full-length cDNA clone ZM_BFb0178N21 mRNA, complete cds NA coding protein psRNATarget
BT069618.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |*||*|*|||||||=|||||||||
targets:1570   CGCUUCAUUUUAUUUCAUUUUAGU   1593

2.5 Zea mays full-length cDNA clone ZM_BFb0195L03 mRNA, complete cds NA coding protein psRNATarget
XM_020546918.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ***|=|*||||=||||||||||||
targets:73   GAAUGCUUUUUGUUCCAUUUUAGU   96

2.5 PREDICTED: Zea mays uncharacterized LOC103643961 (LOC103643961), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235170.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |||**|*||||||||=||||||||
targets:34   CCCAUCAUUUUAUUCUAUUUUAGU   57

2.5 Sequence 1165 from Patent EP2985353 NA coding protein psRNATarget
JB163501.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |||**|*||||||||=||||||||
targets:34   CCCAUCAUUUUAUUCUAUUUUAGU   57

2.5 Sequence 1165 from Patent EP2559767 NA coding protein psRNATarget
HI403040.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |||**|*||||||||=||||||||
targets:34   CCCAUCAUUUUAUUCUAUUUUAGU   57

2.5 Sequence 1165 from Patent EP2074227 NA coding protein psRNATarget
HI403053.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||*|-|*|||||||||||||||||
targets:34   CCAU-CAUUUUAUUCCAUUUUAGU   56

1.0 Sequence 1178 from Patent EP2074227 NA coding protein psRNATarget
LQ235183.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||*|-|*|||||||||||||||||
targets:34   CCAU-CAUUUUAUUCCAUUUUAGU   56

1.0 Sequence 1178 from Patent EP2985353 NA coding protein psRNATarget
JB163514.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  ||*|-|*|||||||||||||||||
targets:34   CCAU-CAUUUUAUUCCAUUUUAGU   56

1.0 Sequence 1178 from Patent EP2559767 NA coding protein psRNATarget
XM_008654984.2
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |||**|*||||||||||||||||*
targets:2936   CCCAUCAUUUUAUUCCAUUUUAGA   2959

2.0 PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA NA coding protein psRNATarget
NM_001305845.1
ncRNA:24   GGGAUGCAAAAUAAGGUAAAAUCA   1
  |==|*|*|||||||||||||||*|
targets:2087   CUUUCCAUUUUAUUCCAUUUUAAU   2110

2.5 Zea mays uncharacterized LOC542022 (LOC542022), mRNA NA coding protein psRNATarget
HI403270.1
ncRNA:21   AUGCAAAAUAAGGUAAAAUCA   1
  |*|*|||||||||||||||||
targets:1   UCCAUUUUAUUCCAUUUUAGU   21

1.0 Sequence 1395 from Patent EP2074227 NA coding protein psRNATarget
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