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BaseInfo

ncRNA ID	novel_zma_miR3568
Species	Zea mays
Class	miRNA
Genome position	Chr9:121908450-121908542 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647221;SRR2647385;SRR2647386;SRR1583941;SRR1583942
Length	22
Mature sequence(if miRNA)	1 - AUCUAGAAAAGCUAAAACGACU - 22
Stem-loop(if miRNA)	--         AUUU   C    A   UUUUACUACGUAUCUAGACAU   UCGUUUUGG    UCU GAUA UAG                     G   |||||||||    ||| |||| |||                     G   AGCAAAAUC    AAA GAUC UAC                     C UC         --GA   -    -   GUCGAUACGUGGAUCUUUAUA
Stem-loop sequence	UCGUUUUGGAUUUUCUCGAUAAUAGUUUUACUACGUAUCUAGACAUGGCAUAUUUCUAGGUGCAUAGCUGCAUCUAGAAAAGCUAAAACGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT035113.1	ncRNA:22   UCAGCAAAAUCGAAAAGAUCUA   1   ||*=|||||||||||||||||* targets:593   AGAUGUUUUAGCUUUUCUAGAC   614 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0040E05 mRNA, complete cds	NA	coding protein	psRNATarget
BT069751.2	ncRNA:22   UCAGCAAAAUCGAAAAGAUCUA   1   |**=|||||||||||||||||| targets:1370   AAAUGUUUUAGCUUUUCUAGAU   1391 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0275C09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546942.1	ncRNA:22   UCAGCAAAAUCGAAAAGAUCUA   1   |||||||*||*||||||||||| targets:135   AGUCGUUCUAACUUUUCUAGAU   156 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109943549 (LOC109943549), mRNA	NA	coding protein	psRNATarget
NM_001349964.1	ncRNA:22   UCAGCAAAAUCGAAAAGAUCUA   1   ||||*||||||||||||||*|| targets:1280   AGUCAUUUUAGCUUUUCUAAAU   1301 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278112 (IDP592), mRNA	NA	coding protein	psRNATarget
BT039099.1	ncRNA:22   UCAGCAAAAUCGAAAAGAUCUA   1   ||*||||*|=|||||||||||| targets:867   AGACGUUCUGGCUUUUCUAGAU   888 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0370L15 mRNA, complete cds	NA	coding protein	psRNATarget
BT054910.2	ncRNA:22   UCAGCAAAAUCGAAAAGAUCUA   1   ||*||*|||=|||||||||||| targets:1403   AGACGGUUUGGCUUUUCUAGAU   1424 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0167O14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676757.2	ncRNA:22   UCAGCAAAAUCGAAAAGAUCUA   1   ||**|||||=|||||||||||| targets:174   AGCAGUUUUGGCUUUUCUAGAU   195 Target Full Sequence	2.5	PREDICTED: Zea mays inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2-like (LOC103651148), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:22   UCAGCAAAAUCGAAAAGAUCUA   1   =|*|||*||=|||||||||||| targets:1650   GGACGUCUUGGCUUUUCUAGAU   1671 Target Full Sequence	2.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT061904.1	ncRNA:22   UCAGCAAAAUCGAAAAGAUCUA   1   *|*|*||||=|||||||||||| targets:884   UGACAUUUUGGCUUUUCUAGAU   905 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0196J05 mRNA, complete cds	NA	coding protein	psRNATarget