Search result

BaseInfo

ncRNA ID	novel_zma_miR3562
Species	Zea mays
Class	miRNA
Genome position	Chr7:153554366-153554449 [-]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287160;SRR2287161;SRR2287162;SRR2287163;SRR2089705
Length	21
Mature sequence(if miRNA)	64 - CGGAGGGAAUUGGAGGGGCUA - 84
Stem-loop(if miRNA)	--                  C        -    C       A   CGGAGGGAAUUGGAGGGG UAAAAUCC CCUC UUAUUCA U   |||||||||||||||||| |||||||| |||| |||||||   GUCUCCCUUAACUUCCCC AUUUUAGG GGAG AAUAAGU U UG                  U        U    -       U
Stem-loop sequence	CGGAGGGAAUUGGAGGGGCUAAAAUCCCCUCCUUAUUCAAUUUUGAAUAAGAGGUGGAUUUUAUCCCCUUCAAUUCCCUCUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163850.1	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||||||||||||||||||||| targets:74   UAGCCCCUCCAAUUCCCUCCG   94 Target Full Sequence	0.0	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
HI403389.1	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||||||||||||||||||||| targets:74   UAGCCCCUCCAAUUCCCUCCG   94 Target Full Sequence	0.0	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235519.1	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||||||||||||||||||||| targets:74   UAGCCCCUCCAAUUCCCUCCG   94 Target Full Sequence	0.0	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   |||||||||||||*||||||| targets:3500   UAGCCCCUCCAAUCCCCUCCG   3520 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   |||||||||||||*||||||| targets:3535   UAGCCCCUCCAAUCCCCUCCG   3555 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||*||||||||||*||||||| targets:684   UAUCCCCUCCAAUCCCCUCCG   704 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||*||||||||||*||||||| targets:1031   UAACCCCUCCAAUCCCCUCCG   1051 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||*||||||||||*||||||| targets:1564   UAUCCCCUCCAAUCCCCUCCG   1584 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||*||||||||||*||||||| targets:1584   UAUCCCCUCCAAUCCCCUCCG   1604 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||*||||||||||*||||||| targets:1608   UAUCCCCUCCAAUCCCCUCCG   1628 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   AUCGGGGAGGUUAAGGGAGGC   1   ||*||||||||||*||||||| targets:1641   UAUCCCCUCCAAUCCCCUCCG   1661 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget