| ncRNA ID | osa-miR5816 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr9:11583948-11584087 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 115 - UAGGAGUGUUUGUAGGAGCGCCAC - 138 |
| Stem-loop(if miRNA) |
G GUA G C AAA G GAGCGUAUAUAGGAAGUUUAAUAGACUUUUAGU UCUA GAGUGUUU G AGCGC ACGUGA U UAG A |||| |||||||| | ||||| |||||| | ||| AGAU UUUACGAA U UUGCG UGCACU A GAG U G -AA G A --G - UUUAUUUAAUCUCUUUAGGAUCUUUAGAUAAUA |
| Stem-loop sequence | UCUAGGAGUGUUUGUAGGAGCGCCACGUGAAAAUGUAGGAGCGUAUAUAGGAAGUUUAAUAGACUUUUAGUAUAUAAUAGAUUUCUAGGAUUUCUCUAAUUUAUUUGAGAGUCACGUAGCGUUGUAAAAGCAUUUGUAGA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CT837786.1 |
|
2.5 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN028I18, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| CT828855.1 |
|
2.5 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI223B02, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK288336.1 |
|
1.0 | Oryza sativa Japonica Group cDNA, clone: J090023A18, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK288484.1 |
|
2.0 | Oryza sativa Japonica Group cDNA, clone: J090040D01, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |