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BaseInfo

ncRNA ID	novel_zma_miR3557
Species	Zea mays
Class	miRNA
Genome position	Chr7:172361875-172361988 [-]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287159;SRR2287163;SRR2287165
Length	21
Mature sequence(if miRNA)	1 - UUCGGUUUUGUGGCUUCCAAA - 21
Stem-loop(if miRNA)	--  UG                 U    AUAA      C    C    CU      A   UG  GGUCACAAAAUCGAAGG GAUU    GGGUUA AAUC CCUU  UAUUCA U   ||  ||||||||||||||||| ||||    |||||| |||| ||||  ||||||   AC  UCGGUGUUUUGGCUUCC CUGA    UCCGAU UUAG GGAA  GUAAGU U AA  CU                 U    CCUC      C    U    AU      U
Stem-loop sequence	UGUGGGUCACAAAAUCGAAGGUGAUUAUAAGGGUUACAAUCCCCUUCUUAUUCAAUUUUGAAUGUAAAGGUGAUUCUAGCCUCUCCAGUCUCCUUCGGUUUUGUGGCUUCCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020537662.1	ncRNA:21   AAACCUUCGGUGUUUUGGCUU   1   |||||=||||||||||||||| targets:11597   UUUGGGAGCCACAAAACCGAA   11617 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100381565 (LOC100381565), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001151652.1	ncRNA:21   AAACCUUCGGUGUUUUGGCUU   1   |||||=|||||||||||||=| targets:1205   UUUGGGAGCCACAAAACCGGA   1225 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278349 (LOC100278349), mRNA	NA	coding protein	psRNATarget
EU973182.1	ncRNA:21   AAACCUUCGGUGUUUUGGCUU   1   |||||=|||||||||||||=| targets:1205   UUUGGGAGCCACAAAACCGGA   1225 Target Full Sequence	2.5	Zea mays clone 394629 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008659944.2	ncRNA:21   AAACCUUCGGUGUUUUGGCUU   1   |||||=|||=||||||||||| targets:3477   UUUGGGAGCUACAAAACCGAA   3497 Target Full Sequence	2.5	PREDICTED: Zea mays translocase of chloroplast 120, chloroplastic (LOC103637626), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008659946.2	ncRNA:21   AAACCUUCGGUGUUUUGGCUU   1   |||||=|||=||||||||||| targets:3486   UUUGGGAGCUACAAAACCGAA   3506 Target Full Sequence	2.5	PREDICTED: Zea mays translocase of chloroplast 120, chloroplastic (LOC103637626), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:21   AAACCUUCGGUGUUUUGGCUU   1   |||||||||||||||||||=* targets:1084   UUUGGAAGCCACAAAACCGGU   1104 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
EZ081804.1	ncRNA:21   AAACCUUCGGUGUUUUGGCUU   1   |||||=||||||||*|||||| targets:1   UUUGGGAGCCACAAUACCGAA   21 Target Full Sequence	2.5	TSA: Zea mays contig17445, mRNA sequence	NA	coding protein	psRNATarget
XM_008662350.2	ncRNA:21   AAACCUUCGGUGUUUUGGCUU   1   ||||*||||||||||||||=| targets:5207   UUUGAAAGCCACAAAACCGGA   5227 Target Full Sequence	2.5	PREDICTED: Zea mays paramyosin (LOC103639615), transcript variant X2, mRNA	NA	coding protein	psRNATarget
AY109112.1	ncRNA:21   AAACCUUCGGUGUUUUGGCUU   1   |*|||=||||||||||||*|| targets:878   UCUGGGAGCCACAAAACCUAA   898 Target Full Sequence	2.5	Zea mays PCO134243 mRNA sequence	NA	coding protein	psRNATarget
XM_020543912.1	ncRNA:21   AAACCUUCGGUGUUUUGGCUU   1   |||**=||||||||||||||| targets:4049   UUUAAGAGCCACAAAACCGAA   4069 Target Full Sequence	3.0	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget