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BaseInfo

ncRNA ID	novel_zma_miR3556
Species	Zea mays
Class	miRNA
Genome position	Chr7:174423775-174423887 [-]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287159;SRR2287160;SRR2287161;SRR2287163
Length	24
Mature sequence(if miRNA)	1 - AAGGAAUGAGUAUAAAAUCGGAUG - 24
Stem-loop(if miRNA)	--A    AAAA                A         CCCC      CAUAGACACA    CUGG    UAUACUCGUUCCUUGU UGCCACUGG    ACAUGU          A    ||||    |||||||||||||||| |||||||||    ||||||          A    GGCU    AUAUGAGUAAGGAACA ACGGUGACU    UGUAUA          A GUA    -AAA                C         -CAC      UCCAUAUAAA
Stem-loop sequence	ACUGGAAAAUAUACUCGUUCCUUGUAUGCCACUGGCCCCACAUGUCAUAGACACAAAAAAAUAUACCUAUAUGUCACUCAGUGGCACACAAGGAAUGAGUAUAAAAUCGGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949300.1	ncRNA:24   GUAGGCUAAAAUAUGAGUAAGGAA   1   ||||*||||||||||||||||||| targets:109   CAUCAGAUUUUAUACUCAUUCCUU   132 Target Full Sequence	0.0	Zea mays clone 400899 mRNA sequence	NA	coding protein	psRNATarget
EU956996.1	ncRNA:24   GUAGGCUAAAAUAUGAGUAAGGAA   1   ||||*||||||||||||||*|||| targets:1551   CAUCAGAUUUUAUACUCAUCCCUU   1574 Target Full Sequence	1.5	Zea mays clone 1579828 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT036355.1	ncRNA:24   GUAGGCUAAAAUAUGAGUAAGGAA   1   ||||*||||||||||||||*|||| targets:940   CAUCAGAUUUUAUACUCAUCCCUU   963 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108G21 mRNA, complete cds	NA	coding protein	psRNATarget
EU967272.1	ncRNA:24   GUAGGCUAAAAUAUGAGUAAGGAA   1   ||||**|||||||||||||||||| targets:526   CAUCAAAUUUUAUACUCAUUCCUU   549 Target Full Sequence	1.0	Zea mays clone 300934 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU942982.1	ncRNA:24   GUAGGCUAAAAUAUGAGUAAGGAA   1   ||||*||||||||||||||*|||| targets:21   CAUCAGAUUUUAUACUCAUCCCUU   44 Target Full Sequence	1.5	Zea mays clone 1548806 mRNA sequence	NA	coding protein	psRNATarget
EZ069616.1	ncRNA:24   GUAGGCUAAAAUAUGAGUAAGGAA   1   ||||*||||||||||||||*|||| targets:241   CAUCAGAUUUUAUACUCAUCCCUU   264 Target Full Sequence	1.5	TSA: Zea mays contig05252, mRNA sequence	NA	coding protein	psRNATarget
EZ080420.1	ncRNA:24   GUAGGCUAAAAUAUGAGUAAGGAA   1   ||||*|||||||||*||||||||| targets:47   CAUCAGAUUUUAUAGUCAUUCCUU   70 Target Full Sequence	1.5	TSA: Zea mays contig16059, mRNA sequence	NA	coding protein	psRNATarget
NM_001150938.2	ncRNA:23   UAGGCUAAAAUAUGAGUAAGGAA   1   |||*|*||||||||||||||||| targets:1   AUCAGCUUUUAUACUCAUUCCUU   23 Target Full Sequence	1.0	Zea mays uncharacterized LOC100277346 (pco129536), mRNA	NA	coding protein	psRNATarget
BT062860.1	ncRNA:24   GUAGGCUAAAAUAUGAGUAAGGAA   1   ||||**|*|||||||||||||||| targets:1057   CAUCAAAAUUUAUACUCAUUCCUU   1080 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0002H21 mRNA, complete cds	NA	coding protein	psRNATarget