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BaseInfo

ncRNA ID novel_zma_miR3552
Species Zea mays
Class miRNA
Genome position Chr6:152369276-152369331 [+]
Reference genome RefGen_v4
Source SRR2287031;SRR2287160;SRR2287162;SRR2287163;SRR2287164
Length 24
Mature sequence(if miRNA) 33 - GUUUAGAGGACGUUGCUGGAGGAA - 56
Stem-loop(if miRNA) --GA                    UUAG
    UCCAGCAGCGUUCUCUAAAU    A
    ||||||||||||||||||||
    AGGUCGUUGCAGGAGAUUUG    G
AAGG                    CCAG
Stem-loop sequence GAUCCAGCAGCGUUCUCUAAAUUUAGAGGACCGUUUAGAGGACGUUGCUGGAGGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166442.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  |*||||||||||||||||||||||
targets:7   UCCCUCCAGCAACGUCCUCUAAAC   30

0.0 Sequence 4106 from Patent EP2559767 NA coding protein psRNATarget
LQ238111.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  |*||||||||||||||||||||||
targets:7   UCCCUCCAGCAACGUCCUCUAAAC   30

0.0 Sequence 4106 from Patent EP2985353 NA coding protein psRNATarget
HI405981.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  |*||||||||||||||||||||||
targets:7   UCCCUCCAGCAACGUCCUCUAAAC   30

0.0 Sequence 4106 from Patent EP2074227 NA coding protein psRNATarget
LQ238109.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  **||||||||||||||||||||||
targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30

0.0 Sequence 4104 from Patent EP2985353 NA coding protein psRNATarget
HI405979.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  **||||||||||||||||||||||
targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30

0.0 Sequence 4104 from Patent EP2074227 NA coding protein psRNATarget
JB166440.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  **||||||||||||||||||||||
targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30

0.0 Sequence 4104 from Patent EP2559767 NA coding protein psRNATarget
LQ237982.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  **||||||||||||||||||||||
targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31

0.0 Sequence 3977 from Patent EP2985353 NA coding protein psRNATarget
JB166313.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  **||||||||||||||||||||||
targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31

0.0 Sequence 3977 from Patent EP2559767 NA coding protein psRNATarget
HI405852.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  **||||||||||||||||||||||
targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31

0.0 Sequence 3977 from Patent EP2074227 NA coding protein psRNATarget
EU945316.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  **||||||||||||||||||||||
targets:1313   CCCCUCCAGCAACGUCCUCUAAAC   1336

0.0 Zea mays clone 257973 mRNA sequence NA coding protein psRNATarget
EZ094330.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  |*||||||||||=|||||||||||
targets:15   UCCCUCCAGCAAUGUCCUCUAAAC   38

1.5 TSA: Zea mays contig29982, mRNA sequence NA coding protein psRNATarget
LQ238002.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  **|||||||||=||||||||||||
targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26

1.5 Sequence 3997 from Patent EP2985353 NA coding protein psRNATarget
HI405872.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  **|||||||||=||||||||||||
targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26

1.5 Sequence 3997 from Patent EP2074227 NA coding protein psRNATarget
JB166333.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  **|||||||||=||||||||||||
targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26

1.5 Sequence 3997 from Patent EP2559767 NA coding protein psRNATarget
EU975903.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  **|||||||||=||||||||||||
targets:658   GCCCUCCAGCAGCGUCCUCUAAAC   681

1.5 Zea mays clone 504920 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU977130.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  |*|||||=|||||||=||||||||
targets:810   UCCCUCCGGCAACGUUCUCUAAAC   833

2.5 Zea mays clone 999810 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001152204.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  |*|||||=|||||||=||||||||
targets:810   UCCCUCCGGCAACGUUCUCUAAAC   833

2.5 Zea mays uncharacterized LOC100279180 (LOC100279180), mRNA NA coding protein psRNATarget
EZ107270.1
ncRNA:24   AAG-----GAGGUCGUUGCAGGAGAUUUG   1
  |||-----||||||||=|||||||||||=
targets:103   UUCUCCGUCUCCAGCAGCGUCCUCUAAAU   131

2.5 TSA: Zea mays contig42928, mRNA sequence NA coding protein psRNATarget
BT088287.1
ncRNA:24   AAG-----GAGGUCGUUGCAGGAGAUUUG   1
  |||-----||||||||=|||||||||||=
targets:580   UUCUCCGUCUCCAGCAGCGUCCUCUAAAU   608

2.5 Zea mays full-length cDNA clone ZM_BFc0119E23 mRNA, complete cds NA coding protein psRNATarget
BT067838.1
ncRNA:24   AAG-----GAGGUCGUUGCAGGAGAUUUG   1
  |||-----||||||||=|||||||||||=
targets:647   UUCUCCGUCUCCAGCAGCGUCCUCUAAAU   675

2.5 Zea mays full-length cDNA clone ZM_BFc0167G13 mRNA, complete cds NA coding protein psRNATarget
XM_008649073.2
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  |*=||||||||=|||||||||||=
targets:1783   UGUCUCCAGCAGCGUCCUCUAAAU   1806

2.5 PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008649072.2
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  |*=||||||||=|||||||||||=
targets:1882   UGUCUCCAGCAGCGUCCUCUAAAU   1905

2.5 PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001152587.1
ncRNA:24   AAG-GAGGUCGUUGCAGGAGAUUUG   1
  |||-|||||*||||||||||||||=
targets:1756   UUCUCUCCAACAACGUCCUCUAAAU   1780

2.0 Zea mays putative putrescine-binding domain family protein (LOC100279590), mRNA NA coding protein psRNATarget
BT054524.1
ncRNA:24   AAG-GAGGUCGUUGCAGGAGAUUUG   1
  |||-|||||*||||||||||||||=
targets:1756   UUCUCUCCAACAACGUCCUCUAAAU   1780

2.0 Zea mays full-length cDNA clone ZM_BFc0129H19 mRNA, complete cds NA coding protein psRNATarget
XM_008680895.2
ncRNA:24   AAG-GAGGUCGUUGCAGGAGAUUUG   1
  |||-|||||*||||||||||||||=
targets:2708   UUCUCUCCAACAACGUCCUCUAAAU   2732

2.0 PREDICTED: Zea mays signal peptidase complex catalytic subunit SEC11C (LOC103654093), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008680896.2
ncRNA:24   AAG-GAGGUCGUUGCAGGAGAUUUG   1
  |||-|||||*||||||||||||||=
targets:2880   UUCUCUCCAACAACGUCCUCUAAAU   2904

2.0 PREDICTED: Zea mays signal peptidase complex catalytic subunit SEC11C (LOC103654093), transcript variant X3, mRNA NA coding protein psRNATarget
HI403327.1
ncRNA:24   AA-GGAGGUCGUUGCAGGAGAUUUG   1
  ||-=||||||||||||||||||*|=
targets:33   UUGUCUCCAGCAACGUCCUCUAUAU   57

2.5 Sequence 1452 from Patent EP2074227 NA coding protein psRNATarget
JB163788.1
ncRNA:24   AA-GGAGGUCGUUGCAGGAGAUUUG   1
  ||-=||||||||||||||||||*|=
targets:33   UUGUCUCCAGCAACGUCCUCUAUAU   57

2.5 Sequence 1452 from Patent EP2559767 NA coding protein psRNATarget
LQ235457.1
ncRNA:24   AA-GGAGGUCGUUGCAGGAGAUUUG   1
  ||-=||||||||||||||||||*|=
targets:33   UUGUCUCCAGCAACGUCCUCUAUAU   57

2.5 Sequence 1452 from Patent EP2985353 NA coding protein psRNATarget
XM_008683257.2
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  |*==|=|||||||||||||||||=
targets:4146   UGUUUUCAGCAACGUCCUCUAAAU   4169

2.0 PREDICTED: Zea mays Tubulin-folding cofactor D (LOC100273796), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008673578.2
ncRNA:24   AAG-----GAGGUCGUUGCAGGAGAUUUG   1
  |||-----||||||||||||||*|||||=
targets:50   UUCUGUGUCUCCAGCAACGUCCCCUAAAU   78

2.5 PREDICTED: Zea mays protein ALP1-like (LOC103649274), mRNA NA coding protein psRNATarget
BT037372.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  |*=||||||||||||||||||*|=
targets:1309   UGUCUCCAGCAACGUCCUCUAUAU   1332

2.5 Zea mays full-length cDNA clone ZM_BFb0166L08 mRNA, complete cds NA coding protein psRNATarget
NM_001143201.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  |*=||||||||||||||||||*|=
targets:1309   UGUCUCCAGCAACGUCCUCUAUAU   1332

2.5 Zea mays Transmembrane ascorbate ferrireductase 1 (cl8731_1(323)), mRNA NA coding protein psRNATarget
XM_008647679.2
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  |*=||||||||||||||||||*|=
targets:1602   UGUCUCCAGCAACGUCCUCUAUAU   1625

2.5 PREDICTED: Zea mays serine/threonine-protein kinase OXI1 (LOC103627390), mRNA NA coding protein psRNATarget
XM_020550176.1
ncRNA:24   AAGGAGGUCGUUGCAGGAGAUUUG   1
  |*=||||||||||||||*|||||=
targets:906   UAUCUCCAGCAACGUCCCCUAAAU   929

2.5 PREDICTED: Zea mays small G protein signaling modulator 1 (LOC103649936), transcript variant X6, mRNA NA coding protein psRNATarget
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