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BaseInfo

ncRNA ID novel_zma_miR3549
Species Zea mays
Class miRNA
Genome position Chr6:130590047-130590100 [+]
Reference genome RefGen_v4
Source SRR2287031
Length 24
Mature sequence(if miRNA) 1 - CCGGUCAGUGUAGCGGCGAAGUGA - 24
Stem-loop(if miRNA) --      A U    C G         U
  CCGGUC G GUAG G CGAAGUGAC G
  |||||| | |||| | |||||||||
  GGUCAG C CGUC C GCUUCACUG C
GA      - -    U G         G
Stem-loop sequence CCGGUCAGUGUAGCGGCGAAGUGACUGCGGUCACUUCGGCUCUGCCGACUGGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020541001.1
ncRNA:24   AGUGAAGCGGCGAUGUGACUGGCC   1
  |||||||||||||*|||||||||*
targets:5023   UCACUUCGCCGCUCCACUGACCGA   5046

2.5 PREDICTED: Zea mays plasma membrane ATPase 2-like (LOC103632998), transcript variant X36, mRNA NA coding protein psRNATarget