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BaseInfo

ncRNA ID	novel_zma_miR3548
Species	Zea mays
Class	miRNA
Genome position	Chr6:122350195-122350241 [+]
Reference genome	RefGen_v4
Source	SRR2287031
Length	22
Mature sequence(if miRNA)	26 - ACCGGACUGUCCGGUGCCUCAU - 47
Stem-loop(if miRNA)	--            U    A      GGGGCACCGGAC GUCC GUGU   |||||||||||| |||| |||G   CUCCGUGGCCUG CAGG CACA UA            U    C
Stem-loop sequence	GGGGCACCGGACUGUCCAGUGUGACACCGGACUGUCCGGUGCCUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ108756.1	ncRNA:22   UACUC-CGUGGCCUGUCAGGCCA   1   |||=|-||||||||||||||||| targets:145   AUGGGCGCACCGGACAGUCCGGU   167 Target Full Sequence	3.0	TSA: Zea mays contig44415, mRNA sequence	NA	coding protein	psRNATarget
BT061709.2	ncRNA:22   UACUC-CGUGGCCUGUCAGGCCA   1   |||=|-||||||||||||||||| targets:588   AUGGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:823   CUGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |||*|||||||||||||*|||| targets:696   AUGUGGCACCGGACAGUACGGU   717 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:22   UACUC-CGUGGCCUGUCAGGCCA   1   |||=|-||||||||||||||||| targets:588   AUGGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	3.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:823   CUGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	2.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |||*|||||||||||||*|||| targets:696   AUGUGGCACCGGACAGUACGGU   717 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
EZ066204.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |||=*||||||||||||||||| targets:91   AUGGCGCACCGGACAGUCCGGU   112 Target Full Sequence	2.0	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget
EZ109126.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |||=*||||||||||||||||| targets:175   AUGGCGCACCGGACAGUCCGGU   196 Target Full Sequence	2.0	TSA: Zea mays contig44785, mRNA sequence	NA	coding protein	psRNATarget
BT083610.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |||=*||||||||||||||||| targets:475   AUGGCGCACCGGACAGUCCGGU   496 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||=**|||||||||||||||| targets:799   GUGGCACACCGGACAGUCCGGU   820 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:697   CUGGCACACCGGACAGUCCGGU   718 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT065862.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |||=||||||||||*||||||| targets:1175   AUGGGGCACCGGACUGUCCGGU   1196 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0155J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175661.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |||=||||||||||*||||||| targets:1175   AUGGGGCACCGGACUGUCCGGU   1196 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382977 (LOC100382977), mRNA	NA	coding protein	psRNATarget
BT038885.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =*|||||=|||||||||||||| targets:861   GGGAGGCGCCGGACAGUCCGGU   882 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds	NA	coding protein	psRNATarget
BT038885.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |||*|*|||||||||||||||| targets:1029   AUGCGCCACCGGACAGUCCGGU   1050 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds	NA	coding protein	psRNATarget
BT038885.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =*****|||||||||||||||| targets:748   GCCUCUCACCGGACAGUCCGGU   769 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds	NA	coding protein	psRNATarget
EU968231.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =*|||||=|||||||||||||| targets:1232   GGGAGGCGCCGGACAGUCCGGU   1253 Target Full Sequence	1.0	Zea mays clone 317172 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968231.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |||*|*|||||||||||||||| targets:1400   AUGCGCCACCGGACAGUCCGGU   1421 Target Full Sequence	2.0	Zea mays clone 317172 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968231.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =*****|||||||||||||||| targets:1119   GCCUCUCACCGGACAGUCCGGU   1140 Target Full Sequence	3.0	Zea mays clone 317172 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB170574.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||=*||||||||||||||||| targets:149   GUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.0	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||=*||||||||||||||||| targets:149   GUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.0	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
HI410113.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||=*||||||||||||||||| targets:149   GUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.0	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
BT069074.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:763   CUGGUGCACCGGACAGUCCGGU   784 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT069074.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:682   GUGCUUCACCGGACAGUCCGGU   703 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||=*||||||||||||||||| targets:491   GUGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:780   CUGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   ||||**||=||||||||||||| targets:699   AUGACUCAUCGGACAGUCCGGU   720 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||=*||||||||||||||||| targets:491   GUGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:780   CUGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   ||||**||=||||||||||||| targets:699   AUGACUCAUCGGACAGUCCGGU   720 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||=*||||||||||||||||| targets:180   GUGGAGCACCGGACAGUCCGGU   201 Target Full Sequence	2.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:391   UUGGCUCACCGGACAGUCCGGU   412 Target Full Sequence	3.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:410   GGUGCACACCGGACAGUCCGGU   431 Target Full Sequence	3.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
LQ242082.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=||||||||||*||||||| targets:12   CUGGGGCACCGGACUGUCCGGU   33 Target Full Sequence	2.5	Sequence 8077 from Patent EP2985353	NA	coding protein	psRNATarget
JB170413.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=||||||||||*||||||| targets:12   CUGGGGCACCGGACUGUCCGGU   33 Target Full Sequence	2.5	Sequence 8077 from Patent EP2559767	NA	coding protein	psRNATarget
HI409952.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=||||||||||*||||||| targets:12   CUGGGGCACCGGACUGUCCGGU   33 Target Full Sequence	2.5	Sequence 8077 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241823.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=||||||||||*||||||| targets:14   CUGGGGCACCGGACUGUCCGGU   35 Target Full Sequence	2.5	Sequence 7818 from Patent EP2985353	NA	coding protein	psRNATarget
JB170154.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=||||||||||*||||||| targets:14   CUGGGGCACCGGACUGUCCGGU   35 Target Full Sequence	2.5	Sequence 7818 from Patent EP2559767	NA	coding protein	psRNATarget
HI409693.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=||||||||||*||||||| targets:14   CUGGGGCACCGGACUGUCCGGU   35 Target Full Sequence	2.5	Sequence 7818 from Patent EP2074227	NA	coding protein	psRNATarget
EZ065990.1	ncRNA:21   ACUCCGUGGCCUGUCAGGCCA   1   ||=*||||||||||||||||| targets:1   UGGCGCACCGGACAGUCCGGU   21 Target Full Sequence	2.0	TSA: Zea mays contig01624, mRNA sequence	NA	coding protein	psRNATarget
JB169871.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:93   CUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
JB169871.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:12   CUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	3.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
HI409410.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:93   CUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
HI409410.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:12   CUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	3.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:93   CUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:12   CUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	3.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
EU971710.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=||||||||||*||||||| targets:76   CUGGGGCACCGGACUGUCCGGU   97 Target Full Sequence	2.5	Zea mays clone 369445 mRNA sequence	NA	coding protein	psRNATarget
BT068112.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:376   CUGGCGCACCGGACAGUCCGGU   397 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:582   UUGGCUCACCGGACAGUCCGGU   603 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:471   GGUGCACACCGGACAGUCCGGU   492 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:601   GGUGCACACCGGACAGUCCGGU   622 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:726   GUGCACCACCGGACAGUCCGGU   747 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:505   CUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:601   UUGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:696   UUGGCUCACCGGACAGUCCGGU   717 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:715   GGUGCACACCGGACAGUCCGGU   736 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:505   CUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:601   UUGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:696   UUGGCUCACCGGACAGUCCGGU   717 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:715   GGUGCACACCGGACAGUCCGGU   736 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:830   CUGGUGCACCGGACAGUCCGGU   851 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =|||**|||||||||||||||| targets:649   GUGAACCACCGGACAGUCCGGU   670 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:22   UA-CUC-CGUGGCCUGUCAGGCCA   1   ||-|=|-||||||||||||||||| targets:483   AUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:581   CUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:679   UUGGCUCACCGGACAGUCCGGU   700 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:600   GGUGCACACCGGACAGUCCGGU   621 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:698   GGUGCACACCGGACAGUCCGGU   719 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:802   GUGCACCACCGGACAGUCCGGU   823 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:22   UA-CUC-CGUGGCCUGUCAGGCCA   1   ||-|=|-||||||||||||||||| targets:483   AUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:581   CUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:679   UUGGCUCACCGGACAGUCCGGU   700 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:600   GGUGCACACCGGACAGUCCGGU   621 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:698   GGUGCACACCGGACAGUCCGGU   719 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:802   GUGCACCACCGGACAGUCCGGU   823 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
EU940974.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=*||||||||||||||||| targets:2540   CUGGCGCACCGGACAGUCCGGU   2561 Target Full Sequence	2.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:2751   UUGGCUCACCGGACAGUCCGGU   2772 Target Full Sequence	3.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:22   UA-CUC-CGUGGCCUGUCAGGCCA   1   ||-|=|-||||||||||||||||| targets:4377   AUCGGGCGCACCGGACAGUCCGGU   4400 Target Full Sequence	3.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
EU964665.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*||||||||||||*||||||| targets:989   AGGAGGCACCGGACUGUCCGGU   1010 Target Full Sequence	1.5	Zea mays clone 280715 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT070124.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*||||||||||||*||||||| targets:969   AGGAGGCACCGGACUGUCCGGU   990 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0099M20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176974.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*||||||||||||*||||||| targets:969   AGGAGGCACCGGACUGUCCGGU   990 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384437 (LOC100384437), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:543   UUGGCUCACCGGACAGUCCGGU   564 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:448   GGUGCACACCGGACAGUCCGGU   469 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:562   GGUGCACACCGGACAGUCCGGU   583 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:665   GUGCACCACCGGACAGUCCGGU   686 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:543   UUGGCUCACCGGACAGUCCGGU   564 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:448   GGUGCACACCGGACAGUCCGGU   469 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:562   GGUGCACACCGGACAGUCCGGU   583 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:665   GUGCACCACCGGACAGUCCGGU   686 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
HI409624.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*|=||||||||||*||||||| targets:8   AAGGGGCACCGGACUGUCCGGU   29 Target Full Sequence	2.5	Sequence 7749 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241754.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*|=||||||||||*||||||| targets:8   AAGGGGCACCGGACUGUCCGGU   29 Target Full Sequence	2.5	Sequence 7749 from Patent EP2985353	NA	coding protein	psRNATarget
JB170085.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*|=||||||||||*||||||| targets:8   AAGGGGCACCGGACUGUCCGGU   29 Target Full Sequence	2.5	Sequence 7749 from Patent EP2559767	NA	coding protein	psRNATarget
BT065201.2	ncRNA:22   UACUC-CGUGGCCUGUCAGGCCA   1   **|=|-||||||||||||||||| targets:585   UCGGGUGCACCGGACAGUCCGGU   607 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:724   UUGGCACACCGGACAGUCCGGU   745 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:743   GGUGCACACCGGACAGUCCGGU   764 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||***|||||||||||||||| targets:815   UUGUCCCACCGGACAGUCCGGU   836 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:22   UACUC-CGUGGCCUGUCAGGCCA   1   **|=|-||||||||||||||||| targets:496   UCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:718   UUGGCUCACCGGACAGUCCGGU   739 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:623   GGUGCACACCGGACAGUCCGGU   644 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:737   GGUGCACACCGGACAGUCCGGU   758 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:840   GGUGCACACCGGACAGUCCGGU   861 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:22   UACUC-CGUGGCCUGUCAGGCCA   1   **|=|-||||||||||||||||| targets:496   UCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:718   UUGGCUCACCGGACAGUCCGGU   739 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:623   GGUGCACACCGGACAGUCCGGU   644 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:737   GGUGCACACCGGACAGUCCGGU   758 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:840   GGUGCACACCGGACAGUCCGGU   861 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061123.2	ncRNA:22   UACUC-CGUGGCCUGUCAGGCCA   1   **|=|-||||||||||||||||| targets:137   UCGGGUGCACCGGACAGUCCGGU   159 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:355   GUGCCUCACCGGACAGUCCGGU   376 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
U41079.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =|||**|||||||||||||||| targets:26   GUGACUCACCGGACAGUCCGGU   47 Target Full Sequence	2.0	Zea mays copia-type retroelement PREM-2, partial sequence	NA	coding protein	psRNATarget
EU964336.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*|=||||||||||*||||||| targets:456   AGGGGGCACCGGACUGUCCGGU   477 Target Full Sequence	2.5	Zea mays clone 278065 mRNA sequence	NA	coding protein	psRNATarget
EU948808.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*|=||||||||||*||||||| targets:750   AGGGGGCACCGGACUGUCCGGU   771 Target Full Sequence	2.5	Zea mays clone 385792 mRNA sequence	NA	coding protein	psRNATarget
EU959991.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||*||||||||||*||||||| targets:571   GUGUGGCACCGGACUGUCCGGU   592 Target Full Sequence	2.5	Zea mays clone 221041 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT019242.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*|=||||||||||*||||||| targets:836   AGGGGGCACCGGACUGUCCGGU   857 Target Full Sequence	2.5	Zea mays clone Contig915.F mRNA sequence	NA	coding protein	psRNATarget
BT019242.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**|*|||||||||*||||||| targets:757   GGUAUGCACCGGACUGUCCGGU   778 Target Full Sequence	2.5	Zea mays clone Contig915.F mRNA sequence	NA	coding protein	psRNATarget
XM_008663618.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||*||||||||||*||||||| targets:657   GUGUGGCACCGGACUGUCCGGU   678 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103640564 (LOC103640564), mRNA	NA	coding protein	psRNATarget
XM_008663618.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =*|=||||||||||*||||||| targets:617   GAGGGGCACCGGACUGUCCGGU   638 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103640564 (LOC103640564), mRNA	NA	coding protein	psRNATarget
BT036301.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*|=||||||||||*||||||| targets:907   AGGGGGCACCGGACUGUCCGGU   928 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:852   GUGCACCACCGGACAGUCCGGU   873 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
EU960150.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*|=||||||||||*||||||| targets:1418   AGGGGGCACCGGACUGUCCGGU   1439 Target Full Sequence	2.5	Zea mays clone 222169 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176839.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*|=||||||||||*||||||| targets:1736   AGGGGGCACCGGACUGUCCGGU   1757 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA	NA	coding protein	psRNATarget
BT069667.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*|=||||||||||*||||||| targets:1736   AGGGGGCACCGGACUGUCCGGU   1757 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds	NA	coding protein	psRNATarget
BT064005.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*|=||||||||||*||||||| targets:1507   AGGGGGCACCGGACUGUCCGGU   1528 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175099.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   |*|=||||||||||*||||||| targets:1507   AGGGGGCACCGGACUGUCCGGU   1528 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA	NA	coding protein	psRNATarget
NM_001349964.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||*|*|||||||||||||||| targets:2994   GUGCGCCACCGGACAGUCCGGU   3015 Target Full Sequence	2.0	Zea mays uncharacterized LOC100278112 (IDP592), mRNA	NA	coding protein	psRNATarget
HI409909.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:34   GUGCACCACCGGACAGUCCGGU   55 Target Full Sequence	3.0	Sequence 8034 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242039.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:34   GUGCACCACCGGACAGUCCGGU   55 Target Full Sequence	3.0	Sequence 8034 from Patent EP2985353	NA	coding protein	psRNATarget
JB170370.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:34   GUGCACCACCGGACAGUCCGGU   55 Target Full Sequence	3.0	Sequence 8034 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   **|=||||||||||*||||||| targets:471   UGGGGGCACCGGACUGUCCGGU   492 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
BT069634.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   **|=||||||||||*||||||| targets:471   UGGGGGCACCGGACUGUCCGGU   492 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||=**|||||||||||||||| targets:96   GUGGCACACCGGACAGUCCGGU   117 Target Full Sequence	3.0	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
HI410183.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 8308 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241168.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7163 from Patent EP2985353	NA	coding protein	psRNATarget
JB169499.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7163 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242313.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 8308 from Patent EP2985353	NA	coding protein	psRNATarget
JB170644.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 8308 from Patent EP2559767	NA	coding protein	psRNATarget
HI409038.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7163 from Patent EP2074227	NA	coding protein	psRNATarget
JB169901.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7565 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241570.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7565 from Patent EP2985353	NA	coding protein	psRNATarget
HI409440.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||***|||||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7565 from Patent EP2074227	NA	coding protein	psRNATarget
EZ101438.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   ***|*|||||*||||||||||| targets:38   UGCACGCACCAGACAGUCCGGU   59 Target Full Sequence	2.5	TSA: Zea mays contig37094, mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =||=**|||||||||||||||| targets:1381   GUGGCACACCGGACAGUCCGGU   1402 Target Full Sequence	3.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   =**=**|||||||||||||||| targets:1400   GGUGCACACCGGACAGUCCGGU   1421 Target Full Sequence	3.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
BT068871.2	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:689   UUGGCUCACCGGACAGUCCGGU   710 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:22   UACUCCGUGGCCUGUCAGGCCA   1   *||=**|||||||||||||||| targets:689   UUGGCUCACCGGACAGUCCGGU   710 Target Full Sequence	3.0	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget