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BaseInfo

ncRNA ID	novel_zma_miR3544
Species	Zea mays
Class	miRNA
Genome position	Chr6:97560139-97560272 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287162;SRR2287164
Length	24
Mature sequence(if miRNA)	1 - AAGGGCAUGUUCGGUUACACUAAU - 24
Stem-loop(if miRNA)	--A     A                                  AU A         C   A     A    AGGGC UGUUCGGUUACACUAAUUUAGGAGGGGAUUGGAG  G UUAAAUCCC UCC AGUCA A    ||||| ||||||||||||||||||||||||||||||||||  | ||||||||| ||| |||||    UCCCG ACAAGCCAAUGUGGUUAGGUUCUCCCCUAACUUC  C AAUUUAGGG AGG UCAGU A AAA     A                                  CC A         A   A     A
Stem-loop sequence	AAGGGCAUGUUCGGUUACACUAAUUUAGGAGGGGAUUGGAGAUGAUUAAAUCCCCUCCAAGUCAAAAAUGACUAGGAAGGGAUUUAAACCCCUUCAAUCCCCUCUUGGAUUGGUGUAACCGAACAAGCCCUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968801.1	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   |||=|||||||||||||||||||| targets:550   AUUGGUGUAACCGAACAUGCCCUU   573 Target Full Sequence	0.0	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   |||=|||||||||||||||||||| targets:550   AUUGGUGUAACCGAACAUGCCCUU   573 Target Full Sequence	0.0	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
XM_020542894.1	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   |||=|||||||||||||||||||* targets:22   AUUGGUGUAACCGAACAUGCCCUG   45 Target Full Sequence	1.0	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (LOC103636763), partial mRNA	NA	coding protein	psRNATarget
NM_001138309.1	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   =||=||||||||||||||*||||| targets:1130   GUUGGUGUAACCGAACAUACCCUU   1153 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193152 (LOC100193152), mRNA	NA	coding protein	psRNATarget
BT035338.1	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   =||=||||||||||||||*||||| targets:1130   GUUGGUGUAACCGAACAUACCCUU   1153 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0056C20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548160.1	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   |||=|||||||||||||*|||||* targets:4819   AUUGGUGUAACCGAACAAGCCCUG   4842 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   |||=|||||||||||||*|||||* targets:5046   AUUGGUGUAACCGAACAAGCCCUG   5069 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY110812.1	ncRNA:24   UAA-UCACAUUGGCUUGUACGGGAA   1   |||-||*|*|||||||||||||||| targets:208   AUUGAGGGGAACCGAACAUGCCCUU   232 Target Full Sequence	2.0	Zea mays CL13054_1 mRNA sequence	NA	coding protein	psRNATarget
JB169178.1	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   |||=||*|||*||||||||||||* targets:37   AUUGGUCUAAGCGAACAUGCCCUG   60 Target Full Sequence	3.0	Sequence 6842 from Patent EP2559767	NA	coding protein	psRNATarget
HI408717.1	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   |||=||*|||*||||||||||||* targets:37   AUUGGUCUAAGCGAACAUGCCCUG   60 Target Full Sequence	3.0	Sequence 6842 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240847.1	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   |||=||*|||*||||||||||||* targets:37   AUUGGUCUAAGCGAACAUGCCCUG   60 Target Full Sequence	3.0	Sequence 6842 from Patent EP2985353	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   |||=*||||||||||||*|||||* targets:118   AUUGAUGUAACCGAACAAGCCCUA   141 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   |||=*||||||||||||*|||||* targets:118   AUUGAUGUAACCGAACAAGCCCUA   141 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   |||=*||||||||||||*|||||* targets:118   AUUGAUGUAACCGAACAAGCCCUA   141 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001165826.1	ncRNA:24   UAAUCA--CAUUGGCUUGUACGGGAA   1   |||**|--|||||||||||||||||| targets:1565   AUUCCUUCGUAACCGAACAUGCCCUU   1590 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304390 (LOC100304390), mRNA	NA	coding protein	psRNATarget
BT061020.1	ncRNA:24   UAAUCA--CAUUGGCUUGUACGGGAA   1   |||**|--|||||||||||||||||| targets:1565   AUUCCUUCGUAACCGAACAUGCCCUU   1590 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0086M16 mRNA, complete cds	NA	coding protein	psRNATarget
EU957179.1	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   ||*=|||||||||||||*|||||* targets:1585   AUCGGUGUAACCGAACAAGCCCUG   1608 Target Full Sequence	2.5	Zea mays clone 1584995 mRNA sequence	NA	coding protein	psRNATarget
XM_008649778.2	ncRNA:24   UAAUCA--CAUUGGCUUGUACGGGAA   1   |||**|--|||||||||||||||||| targets:2011   AUUCCUUCGUAACCGAACAUGCCCUU   2036 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100304390 (LOC100304390), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT085555.1	ncRNA:24   UAAUCACAUUGGCUUGUACGGGAA   1   *||=*||*|||||||||*|||||| targets:1384   UUUGAUGAAACCGAACAAGCCCUU   1407 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0032K01 mRNA, complete cds	NA	coding protein	psRNATarget