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BaseInfo

ncRNA ID	novel_zma_miR3543
Species	Zea mays
Class	miRNA
Genome position	Chr10:136242324-136242548 [+]
Reference genome	RefGen_v4
Source	SRR2287031
Length	24
Mature sequence(if miRNA)	202 - UACCCCUUUGAACACCAGAUACGU - 225
Stem-loop(if miRNA)	--      A   C                                                        UC       CCA         AC    A            AGGG   GUAUCU GUG UCAAAGGGGUACGGUGCUCAUGUGCACAUUUUAAAUCUGGUGCAUCCAUCUUGCAU  AACGGCA   GCUAAUUUU  GAAG ACCCCUUCCACC    G   |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||   |||||||||  |||| ||||||||||||   CAUAGA CAC AGUUUCCCCAUGCCACGAGUACACGUGUAAAAUUUAGACCACGUAGGUAGAAUGUA  UUGUCGU   UGGUUAAAA  CUUC UGGGGAAGGUGG    A UG      C   A                                                        GA       -CG         CA    G            AAGG
Stem-loop sequence	GUAUCUAGUGCUCAAAGGGGUACGGUGCUCAUGUGCACAUUUUAAAUCUGGUGCAUCCAUCUUGCAUUCAACGGCACCAGCUAAUUUUACGAAGAACCCCUUCCACCAGGGGAGGAAGGUGGAAGGGGUGCUUCACAAAAUUGGUGCUGCUGUUAGAUGUAAGAUGGAUGCACCAGAUUUAAAAUGUGCACAUGAGCACCGUACCCCUUUGAACACCAGAUACGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT062061.1	ncRNA:24   UGCAUAGACCACAAGUUUCCCCAU   1   ||||||||||||*||||||||||| targets:194   ACGUAUCUGGUGCUCAAAGGGGUA   217 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0211A21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001350153.2	ncRNA:24   UGCAUAGACCACAAGUUUCCCCAU   1   ||||||||||||*||||||||||| targets:194   ACGUAUCUGGUGCUCAAAGGGGUA   217 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275401 (LOC100275401), mRNA	NA	coding protein	psRNATarget
XM_008661793.2	ncRNA:24   UGCAUAGACCACAAGUUUCCCCAU   1   ||*|||||||||*||||||||||| targets:875   ACAUAUCUGGUGCUCAAAGGGGUA   898 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661794.2	ncRNA:24   UGCAUAGACCACAAGUUUCCCCAU   1   ||*|||||||||*||||||||||| targets:884   ACAUAUCUGGUGCUCAAAGGGGUA   907 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA	NA	coding protein	psRNATarget