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BaseInfo

ncRNA ID novel_zma_miR3541
Species Zea mays
Class miRNA
Genome position Chr6:7779014-7779105 [+]
Reference genome RefGen_v4
Source SRR2287031;SRR2287165
Length 24
Mature sequence(if miRNA) 69 - AGGCAAAUUGUGGCACCUUAGGUA - 92
Stem-loop(if miRNA) --   U  C        CA        UUUUAUACCUAAG       CU  A
  CCU AG UGCCACAA  UGCCUAAC             CUUAGUU  UC A
  ||| || ||||||||  ||||||||             |||||||  || U
  GGA UC ACGGUGUU  ACGGAUUG             GAAUUAG  AG U
AU   U  C        AA        -------------       CU  U
Stem-loop sequence CCUUAGCUGCCACAACAUGCCUAACUUUUAUACCUAAGCUUAGUUCUUCAAUUUGAUCGAUUAAGGUUAGGCAAAUUGUGGCACCUUAGGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU955574.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |||||*||*|||||||||||||||
targets:127   UACCUCAGUUGCCACAAUUUGCCU   150

2.0 Zea mays clone 1537438 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149469.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |||||*||*|||||||||||||||
targets:127   UACCUCAGUUGCCACAAUUUGCCU   150

2.0 Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA NA coding protein psRNATarget
HI403023.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |=|||||||*|||||||*||||||
targets:15   UGCCUAAGGCGCCACAACUUGCCU   38

2.5 Sequence 1148 from Patent EP2074227 NA coding protein psRNATarget
LQ235076.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |=|||||||*|||||||*||||||
targets:15   UGCCUAAGGCGCCACAACUUGCCU   38

2.5 Sequence 1071 from Patent EP2985353 NA coding protein psRNATarget
HI403021.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |=|||||||*||||||||*|||||
targets:15   UGCCUAAGGCGCCACAAUCUGCCU   38

2.5 Sequence 1146 from Patent EP2074227 NA coding protein psRNATarget
JB163484.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |=|||||||*|||||||*||||||
targets:15   UGCCUAAGGCGCCACAACUUGCCU   38

2.5 Sequence 1148 from Patent EP2559767 NA coding protein psRNATarget
JB163482.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |=|||||||*||||||||*|||||
targets:15   UGCCUAAGGCGCCACAAUCUGCCU   38

2.5 Sequence 1146 from Patent EP2559767 NA coding protein psRNATarget
LQ235153.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |=|||||||*|||||||*||||||
targets:15   UGCCUAAGGCGCCACAACUUGCCU   38

2.5 Sequence 1148 from Patent EP2985353 NA coding protein psRNATarget
HI402946.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |=|||||||*|||||||*||||||
targets:15   UGCCUAAGGCGCCACAACUUGCCU   38

2.5 Sequence 1071 from Patent EP2074227 NA coding protein psRNATarget
HI403145.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |=|||||||*|||||||*||||||
targets:15   UGCCUAAGGCGCCACAACUUGCCU   38

2.5 Sequence 1270 from Patent EP2074227 NA coding protein psRNATarget
JB163407.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |=|||||||*|||||||*||||||
targets:15   UGCCUAAGGCGCCACAACUUGCCU   38

2.5 Sequence 1071 from Patent EP2559767 NA coding protein psRNATarget
LQ235275.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |=|||||||*|||||||*||||||
targets:15   UGCCUAAGGCGCCACAACUUGCCU   38

2.5 Sequence 1270 from Patent EP2985353 NA coding protein psRNATarget
LQ235151.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |=|||||||*||||||||*|||||
targets:15   UGCCUAAGGCGCCACAAUCUGCCU   38

2.5 Sequence 1146 from Patent EP2985353 NA coding protein psRNATarget
JB163606.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |=|||||||*|||||||*||||||
targets:15   UGCCUAAGGCGCCACAACUUGCCU   38

2.5 Sequence 1270 from Patent EP2559767 NA coding protein psRNATarget
AY109434.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |=||||||*|||||||*|||||||
targets:399   UGCCUAAGUUGCCACACUUUGCCU   422

2.5 Zea mays CL2997_-2 mRNA sequence NA coding protein psRNATarget
JB163373.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |==||||*|**|||||||||||||
targets:12   UGUCUAAAGCUCCACAAUUUGCCU   35

3.0 Sequence 1037 from Patent EP2559767 NA coding protein psRNATarget
HI402912.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |==||||*|**|||||||||||||
targets:12   UGUCUAAAGCUCCACAAUUUGCCU   35

3.0 Sequence 1037 from Patent EP2074227 NA coding protein psRNATarget
LQ235042.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  |==||||*|**|||||||||||||
targets:12   UGUCUAAAGCUCCACAAUUUGCCU   35

3.0 Sequence 1037 from Patent EP2985353 NA coding protein psRNATarget
XM_008667123.2
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  *||=*||*||||||||*|||||||
targets:46   GACUAAAUGUGCCACACUUUGCCU   69

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008667124.2
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  *||=*||*||||||||*|||||||
targets:46   GACUAAAUGUGCCACACUUUGCCU   69

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546911.1
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  *||=*||*||||||||*|||||||
targets:46   GACUAAAUGUGCCACACUUUGCCU   69

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008667122.2
ncRNA:24   AUGGAUUCCACGGUGUUAAACGGA   1
  *||=*||*||||||||*|||||||
targets:46   GACUAAAUGUGCCACACUUUGCCU   69

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X1, mRNA NA coding protein psRNATarget
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