ncRNA ID | osa-miR5536 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr9:9140162-9140307 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 11 - AAUGGUAGUGACAUUAUGGUAG - 32 |
Stem-loop(if miRNA) |
UGA G        A      A            C  U     GU  GUAGAUCUCACCC     -----UUGCCCC   UA    G AUCCUCUA CAUAAU UCAUUAUCAUUA AG UACUG  AU             UCCUA            ACA  U    | |||||||| |||||| |||||||||||| || |||||  ||             |||||            |||    U UAGGAGAU GUAUUA AGUGAUGGUAAU UC AUGAC  UA             AGGAU            UGU  C AAG G        G      C            A  C     UG  -------------     UUUUUUUAUAUC   UA |
Stem-loop sequence | UGAGGAUCCUCUAACAUAAUAUCAUUAUCAUUACAGUUACUGGUAUGUAGAUCUCACCCUCCUAUUGCCCCACAUAUCAUUGUCUAUAUUUUUUUUAGGAAUGUCAGUACCUAUAAUGGUAGUGACAUUAUGGUAGAGGAUGUGAA |
1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |