Search result

BaseInfo

ncRNA ID osa-miR5536
Species Oryza sativa
Class miRNA
Genome position Chr9:9140162-9140307 [-]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 11 - AAUGGUAGUGACAUUAUGGUAG - 32
Stem-loop(if miRNA) UGA G        A      A            C  U     GU  GUAGAUCUCACCC     -----UUGCCCC   UA
   G AUCCUCUA CAUAAU UCAUUAUCAUUA AG UACUG  AU             UCCUA            ACA  U
   | |||||||| |||||| |||||||||||| || |||||  ||             |||||            |||
   U UAGGAGAU GUAUUA AGUGAUGGUAAU UC AUGAC  UA             AGGAU            UGU  C
AAG G        G      C            A  C     UG  -------------     UUUUUUUAUAUC   UA
Stem-loop sequence UGAGGAUCCUCUAACAUAAUAUCAUUAUCAUUACAGUUACUGGUAUGUAGAUCUCACCCUCCUAUUGCCCCACAUAUCAUUGUCUAUAUUUUUUUUAGGAAUGUCAGUACCUAUAAUGGUAGUGACAUUAUGGUAGAGGAUGUGAA

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).