Search result

BaseInfo

ncRNA ID	novel_zma_miR3538
Species	Zea mays
Class	miRNA
Genome position	Chr6:20496664-20496755 [-]
Reference genome	RefGen_v4
Source	SRR2287031
Length	24
Mature sequence(if miRNA)	1 - AUUUAAGGACUAAAAUGGAAUAAA - 24
Stem-loop(if miRNA)	--                -CU                            UAUUCCAUUUUAGUCC   AAUUACUAAAUAUGGAAACUAAAAUA   ||||||||||||||||   |||||||||||||||||||||||||G   AUAAGGUAAAAUCAGG   UUAAUGAUUUAUGCUUUUGAUUUUGA AA                AAU
Stem-loop sequence	UAUUCCAUUUUAGUCCCUAAUUACUAAAUAUGGAAACUAAAAUAGAGUUUUAGUUUUCGUAUUUAGUAAUUUAAGGACUAAAAUGGAAUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545045.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:2162   UUUAUUCCAUUUUAGUCCCUAAAU   2185 Target Full Sequence	1.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:305   UUUAUUCCAUUUUAGUCCCUAAAU   328 Target Full Sequence	1.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:180   UUUAUUCCAUUUUAGUCCCUAAAU   203 Target Full Sequence	1.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:180   UUUAUUCCAUUUUAGUCCCUAAAU   203 Target Full Sequence	1.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:180   UUUAUUCCAUUUUAGUCCCUAAAU   203 Target Full Sequence	1.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:89   UUUAUUCCAUUUUAGUCCCUAAAU   112 Target Full Sequence	1.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:89   UUUAUUCCAUUUUAGUCCCUAAAU   112 Target Full Sequence	1.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:89   UUUAUUCCAUUUUAGUCCCUAAAU   112 Target Full Sequence	1.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
JB163812.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1476 from Patent EP2559767	NA	coding protein	psRNATarget
HI403351.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1476 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235481.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1476 from Patent EP2985353	NA	coding protein	psRNATarget
JB163864.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1528 from Patent EP2559767	NA	coding protein	psRNATarget
HI403419.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1544 from Patent EP2074227	NA	coding protein	psRNATarget
JB163852.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1516 from Patent EP2559767	NA	coding protein	psRNATarget
JB163731.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1395 from Patent EP2559767	NA	coding protein	psRNATarget
JB163824.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1488 from Patent EP2559767	NA	coding protein	psRNATarget
HI403270.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1395 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235578.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1573 from Patent EP2985353	NA	coding protein	psRNATarget
HI403403.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1528 from Patent EP2074227	NA	coding protein	psRNATarget
JB163892.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1556 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235400.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1395 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235490.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1485 from Patent EP2985353	NA	coding protein	psRNATarget
JB163832.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1496 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235549.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1544 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235521.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1516 from Patent EP2985353	NA	coding protein	psRNATarget
HI403360.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1485 from Patent EP2074227	NA	coding protein	psRNATarget
JB163909.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1573 from Patent EP2559767	NA	coding protein	psRNATarget
HI403391.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1516 from Patent EP2074227	NA	coding protein	psRNATarget
JB163821.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1485 from Patent EP2559767	NA	coding protein	psRNATarget
HI403363.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1488 from Patent EP2074227	NA	coding protein	psRNATarget
HI403309.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1434 from Patent EP2074227	NA	coding protein	psRNATarget
HI403431.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1556 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235501.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1496 from Patent EP2985353	NA	coding protein	psRNATarget
HI403448.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1573 from Patent EP2074227	NA	coding protein	psRNATarget
JB163880.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1544 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235439.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1434 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235493.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1488 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235561.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1556 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235533.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1528 from Patent EP2985353	NA	coding protein	psRNATarget
JB163770.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1434 from Patent EP2559767	NA	coding protein	psRNATarget
HI403371.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1496 from Patent EP2074227	NA	coding protein	psRNATarget
JB163726.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1390 from Patent EP2559767	NA	coding protein	psRNATarget
HI403265.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1390 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235395.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1390 from Patent EP2985353	NA	coding protein	psRNATarget
HI403442.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1567 from Patent EP2074227	NA	coding protein	psRNATarget
JB163903.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1567 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235547.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1542 from Patent EP2985353	NA	coding protein	psRNATarget
JB163878.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1542 from Patent EP2559767	NA	coding protein	psRNATarget
HI403417.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1542 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235572.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||||||||||||||*||||| targets:6   UUUAUUCCAUUUUAGUCCCUAAAU   29 Target Full Sequence	1.5	Sequence 1567 from Patent EP2985353	NA	coding protein	psRNATarget
EU957613.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   *||||||=||||||||=||||||| targets:666   CUUAUUCUAUUUUAGUUCUUAAAU   689 Target Full Sequence	2.5	Zea mays clone 1599137 mRNA sequence	NA	coding protein	psRNATarget
JB163700.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||=|||||||||||*||||| targets:6   UUUAUUUCAUUUUAGUCCCUAAAU   29 Target Full Sequence	2.5	Sequence 1364 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235369.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||=|||||||||||*||||| targets:6   UUUAUUUCAUUUUAGUCCCUAAAU   29 Target Full Sequence	2.5	Sequence 1364 from Patent EP2985353	NA	coding protein	psRNATarget
HI403239.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||||||=|||||||||||*||||| targets:6   UUUAUUUCAUUUUAGUCCCUAAAU   29 Target Full Sequence	2.5	Sequence 1364 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239062.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   *||||||=||||||||||*||||| targets:19   GUUAUUCUAUUUUAGUCCCUAAAU   42 Target Full Sequence	2.5	Sequence 5057 from Patent EP2985353	NA	coding protein	psRNATarget
HI406932.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   *||||||=||||||||||*||||| targets:19   GUUAUUCUAUUUUAGUCCCUAAAU   42 Target Full Sequence	2.5	Sequence 5057 from Patent EP2074227	NA	coding protein	psRNATarget
JB167393.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   *||||||=||||||||||*||||| targets:19   GUUAUUCUAUUUUAGUCCCUAAAU   42 Target Full Sequence	2.5	Sequence 5057 from Patent EP2559767	NA	coding protein	psRNATarget
EU946945.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   |||||||*||||||||||*||||| targets:607   UUUAUUCAAUUUUAGUCCCUAAAU   630 Target Full Sequence	2.5	Zea mays clone 325236 mRNA sequence	NA	coding protein	psRNATarget
LQ235536.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||*|||||||||||||||*||||| targets:5   UUAAUUCCAUUUUAGUCCCUAAAU   28 Target Full Sequence	1.5	Sequence 1531 from Patent EP2985353	NA	coding protein	psRNATarget
HI403406.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||*|||||||||||||||*||||| targets:5   UUAAUUCCAUUUUAGUCCCUAAAU   28 Target Full Sequence	1.5	Sequence 1531 from Patent EP2074227	NA	coding protein	psRNATarget
JB163867.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||*|||||||||||||||*||||| targets:5   UUAAUUCCAUUUUAGUCCCUAAAU   28 Target Full Sequence	1.5	Sequence 1531 from Patent EP2559767	NA	coding protein	psRNATarget
BT085047.1	ncRNA:24   AAAUAAGGUAAAAUCAGGAAUUUA   1   ||*||||=||||||||||*||||| targets:1231   UUAAUUCUAUUUUAGUCCCUAAAU   1254 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds	NA	coding protein	psRNATarget