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BaseInfo

ncRNA ID novel_zma_miR3531
Species Zea mays
Class miRNA
Genome position Chr6:140532364-140532477 [-]
Reference genome RefGen_v4
Source SRR2287031;SRR2287159;SRR5451003
Length 24
Mature sequence(if miRNA) 1 - AAAAUAGAAUAAAAUAGAUGGACU - 24
Stem-loop(if miRNA) --      A         C        CUCU    UAUA     U A          
  UCCAUC AUUUUAUUC AUUUUAGU    AAAU    AAAUA G AAAUUAAAAUA
  |||||| ||||||||| ||||||||    ||||    ||||| | ||||||||||G
  AGGUAG UAAAAUAAG UAAAAUUA    UUUA    UUUAU C UUUGAUUUUGA
UC      A         A        AAAU    -UUG     C C          
Stem-loop sequence UCCAUCAAUUUUAUUCCAUUUUAGUCUCUAAAUUAUAAAAUAUGAAAAUUAAAAUAGAGUUUUAGUUUCCCUAUUUGUUAUUUUAAAAUUAAAAUAGAAUAAAAUAGAUGGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008668788.2
ncRNA:24   UCAGGUAGAUAAAAUAAG-AUAAAA   1
  ||||=|||||||||||||-||||||
targets:1462   AGUCUAUCUAUUUUAUUCCUAUUUU   1486

3.0 PREDICTED: Zea mays putative tetraacyldisaccharide 4-kinase family protein (LOC100272815), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546524.1
ncRNA:24   UCAGGUAGAUAAAAUAAG-AUAAAA   1
  ||||=|||||||||||||-||||||
targets:1182   AGUCUAUCUAUUUUAUUCCUAUUUU   1206

3.0 PREDICTED: Zea mays probable tetraacyldisaccharide 4'-kinase, mitochondrial (LOC109943461), mRNA NA coding protein psRNATarget
NM_001147268.1
ncRNA:24   UCAGGUAGAUAAAAUAAG-AUAAAA   1
  ||||=|||||||||||||-||||||
targets:1270   AGUCUAUCUAUUUUAUUCCUAUUUU   1294

3.0 Zea mays putative tetraacyldisaccharide 4-kinase family protein (LOC100272815), mRNA NA coding protein psRNATarget
BT039501.1
ncRNA:24   UCAGGUAGAUAAAAUAAG-AUAAAA   1
  ||||=|||||||||||||-||||||
targets:1270   AGUCUAUCUAUUUUAUUCCUAUUUU   1294

3.0 Zea mays full-length cDNA clone ZM_BFc0016E17 mRNA, complete cds NA coding protein psRNATarget
BT038994.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  |||==*||||||||||||||||||
targets:1105   AGUUUCUCUAUUUUAUUCUAUUUU   1128

1.0 Zea mays full-length cDNA clone ZM_BFb0348D04 mRNA, complete cds NA coding protein psRNATarget
NM_001147048.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  |||==*||||||||||||||||||
targets:1105   AGUUUCUCUAUUUUAUUCUAUUUU   1128

1.0 Zea mays Nudix hydrolase 23 chloroplastic (LOC100272585), mRNA NA coding protein psRNATarget
XM_008679903.2
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  =|||=*|||||||||||=||||||
targets:1741   GGUCUCUCUAUUUUAUUUUAUUUU   1764

2.5 PREDICTED: Zea mays berberine bridge enzyme-like 8 (LOC103652911), mRNA NA coding protein psRNATarget
XM_008667360.2
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  |||||*|*||||||||||||||||
targets:1068   AGUCCCUAUAUUUUAUUCUAUUUU   1091

2.0 PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA NA coding protein psRNATarget
HI406614.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  ||||||||*|*|||||||||||||
targets:157   AGUCCAUCCACUUUAUUCUAUUUU   180

2.0 Sequence 4739 from Patent EP2074227 NA coding protein psRNATarget
JB167075.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  ||||||||*|*|||||||||||||
targets:157   AGUCCAUCCACUUUAUUCUAUUUU   180

2.0 Sequence 4739 from Patent EP2559767 NA coding protein psRNATarget
LQ238744.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  ||||||||*|*|||||||||||||
targets:157   AGUCCAUCCACUUUAUUCUAUUUU   180

2.0 Sequence 4739 from Patent EP2985353 NA coding protein psRNATarget
HI408748.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  ||||||||*|*|||||||||||||
targets:3   AGUCCAUCCACUUUAUUCUAUUUU   26

2.0 Sequence 6873 from Patent EP2074227 NA coding protein psRNATarget
JB169209.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  ||||||||*|*|||||||||||||
targets:3   AGUCCAUCCACUUUAUUCUAUUUU   26

2.0 Sequence 6873 from Patent EP2559767 NA coding protein psRNATarget
LQ240878.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  ||||||||*|*|||||||||||||
targets:3   AGUCCAUCCACUUUAUUCUAUUUU   26

2.0 Sequence 6873 from Patent EP2985353 NA coding protein psRNATarget
NM_001112512.2
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  |||||*|=*|||||||||||||||
targets:1668   AGUCCCUUCAUUUUAUUCUAUUUU   1691

3.0 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  |||||*|=*|||||||||||||||
targets:838   AGUCCCUUCAUUUUAUUCUAUUUU   861

3.0 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
EU946945.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  ||||=*||||||||||||*|||||
targets:596   AGUCUCUCUAUUUUAUUCAAUUUU   619

2.5 Zea mays clone 325236 mRNA sequence NA coding protein psRNATarget
HI403055.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  |||||*|=*|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52

3.0 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
LQ235185.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  |||||*|=*|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52

3.0 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
JB163516.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  |||||*|=*|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52

3.0 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
LQ235180.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  |||||*|=*|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52

3.0 Sequence 1175 from Patent EP2985353 NA coding protein psRNATarget
HI403050.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  |||||*|=*|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52

3.0 Sequence 1175 from Patent EP2074227 NA coding protein psRNATarget
JB163511.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  |||||*|=*|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52

3.0 Sequence 1175 from Patent EP2559767 NA coding protein psRNATarget
AY106862.1
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  |||=|*||*||||||||||||||*
targets:364   AGUUCUUCCAUUUUAUUCUAUUUA   387

3.0 Zea mays PCO139775 mRNA sequence NA coding protein psRNATarget
BT069174.2
ncRNA:24   UCAGGUAGAUAAAAUAAGAUAAAA   1
  *||*|||=|=*|||||||||||||
targets:803   UGUGCAUUUGAUUUAUUCUAUUUU   826

3.0 Zea mays full-length cDNA clone ZM_BFb0229G12 mRNA, complete cds NA coding protein psRNATarget
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