Search result

BaseInfo

ncRNA ID novel_zma_miR3530
Species Zea mays
Class miRNA
Genome position Chr6:160388356-160388445 [-]
Reference genome RefGen_v4
Source SRR2287031
Length 24
Mature sequence(if miRNA) 1 - GUAAAAUGUCAUAACACCGUUGGA - 24
Stem-loop(if miRNA) --              UC    UUUUU    AAC   A  -AA    A
  UAACGGUGUUGUGG  UUUU     AAUG   AGC CC   CAUG A
  ||||||||||||||  ||||     ||||   ||| ||   |||| G
  GUUGCCACAAUACU  AAAA     UUAU   UCG GG   GUGC A
AG              GU    --UGU    ---   -  AGG    G
Stem-loop sequence UAACGGUGUUGUGGUCUUUUUUUUUAAUGAACAGCACCAACAUGAAGAGCGUGGGAGGGCUUAUUUGUAAAAUGUCAUAACACCGUUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008664717.2
ncRNA:24   AGGUUGCCACAAUACUGUAAAAUG   1
  ||=|||||||||||||||||||**
targets:2600   UCUAACGGUGUUAUGACAUUUUUG   2623

2.5 PREDICTED: Zea mays tRNA (cytosine(34)-C(5))-methyltransferase (LOC103641349), transcript variant X5, mRNA NA coding protein psRNATarget