ncRNA ID | osa-miR2865 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr9:8515693-8515793 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 70 - CUCAGCAGUCGACUGUACCGUG - 91 |
Stem-loop(if miRNA) |
----   C   -      A      G                G        CC     GAU UGA AUCCUC GCAGUC ACUGUACCGUGCCUUU UCAUUGAU  A     ||| ||| |||||| |||||| |||||||||||||||| ||||||||     CUA ACU UAGGAG CGUCAG UGACGUGGCACGGAAA AGUGAUUG  C AGGC   -   C      A      -                A        UA |
Stem-loop sequence | GAUCUGAAUCCUCAGCAGUCGACUGUACCGUGCCUUUGUCAUUGAUCCACAUGUUAGUGAAAAAGGCACGGUGCAGUGACUGCAGAGGAUCUCAAUCCGGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
JB164585.1 |
|
2.5 | Sequence 2249 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
LQ236254.1 |
|
2.5 | Sequence 2249 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
HI404124.1 |
|
2.5 | Sequence 2249 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
XM_015769898.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group protein LYK5 (LOC4331165), mRNA | protein LYK5(LOC4331165) | coding protein | psRNATarget |
1 | PMID:19903869
"Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009). |