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BaseInfo

ncRNA ID osa-miR2865
Species Oryza sativa
Class miRNA
Genome position Chr9:8515693-8515793 [-]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 70 - CUCAGCAGUCGACUGUACCGUG - 91
Stem-loop(if miRNA) ----   C   -      A      G                G        CC
    GAU UGA AUCCUC GCAGUC ACUGUACCGUGCCUUU UCAUUGAU  A
    ||| ||| |||||| |||||| |||||||||||||||| ||||||||
    CUA ACU UAGGAG CGUCAG UGACGUGGCACGGAAA AGUGAUUG  C
AGGC   -   C      A      -                A        UA
Stem-loop sequence GAUCUGAAUCCUCAGCAGUCGACUGUACCGUGCCUUUGUCAUUGAUCCACAUGUUAGUGAAAAAGGCACGGUGCAGUGACUGCAGAGGAUCUCAAUCCGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB164585.1
ncRNA:22   GUGCCAUGUCAGCUGACGACUC   1
  |=||||=|||||||||||*|||
targets:50   CGCGGUGCAGUCGACUGCAGAG   71

2.5 Sequence 2249 from Patent EP2559767 NA coding protein psRNATarget
LQ236254.1
ncRNA:22   GUGCCAUGUCAGCUGACGACUC   1
  |=||||=|||||||||||*|||
targets:50   CGCGGUGCAGUCGACUGCAGAG   71

2.5 Sequence 2249 from Patent EP2985353 NA coding protein psRNATarget
HI404124.1
ncRNA:22   GUGCCAUGUCAGCUGACGACUC   1
  |=||||=|||||||||||*|||
targets:50   CGCGGUGCAGUCGACUGCAGAG   71

2.5 Sequence 2249 from Patent EP2074227 NA coding protein psRNATarget
XM_015769898.1
ncRNA:22   GUGCCAUGUCAGCUGACGACUC   1
  =|||||=|||||||||||*|||
targets:1898   UACGGUGCAGUCGACUGCAGAG   1919

2.5 PREDICTED: Oryza sativa Japonica Group protein LYK5 (LOC4331165), mRNA protein LYK5(LOC4331165) coding protein psRNATarget

Reference

1 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).