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BaseInfo

ncRNA ID	novel_zma_miR3527
Species	Zea mays
Class	miRNA
Genome position	Chr6:166219905-166220130 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287159;SRR4237225;SRR5105959;SRR5451003;SRR5451006
Length	24
Mature sequence(if miRNA)	1 - ACAUAGAAGACUGGUGCACAUGGU - 24
Stem-loop(if miRNA)	--    A   G C                                                              -AUUAUU  A     A  UA       C  C ACUACA   ACAU GAA A UGGUGCACAUGGUGCACAUAUUAAAUCAUCACCACUUAUUUUAGAUCUAACGUCUCUAGUUG       CA UUUAC AA  ACACCUU CA C      C   |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||| ||  ||||||| || |      A   UGUA CUU U ACCACGUGUACCACGUGUAUAAUUUAGUAGUGGUGAGUAAAAUCUAGAUUGCAGAGAUCAAC       GU AAAUG UU  UGUGGGA GU G      C CG    C   G U                                                              AAACCAU  A     A  CC       A  U CACCAC
Stem-loop sequence	ACAUAGAAGACUGGUGCACAUGGUGCACAUAUUAAAUCAUCACCACUUAUUUUAGAUCUAACGUCUCUAGUUGAUUAUUCAAUUUACAAAUAACACCUUCCACCACUACACACCACCACGUUGAAGGGUGUCCUUAGUAAAAUGUACCAAACAACUAGAGACGUUAGAUCUAAAAUGAGUGGUGAUGAUUUAAUAUGUGCACCAUGUGCACCAUUGUUCCAUGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552764.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |||||||*|||||||||||||||| targets:3118   ACCAUGUACACCAGUCUUCUAUGU   3141 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681116.2	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |||||||*|||||||||||||||| targets:3296   ACCAUGUACACCAGUCUUCUAUGU   3319 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI402998.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2074227	NA	coding protein	psRNATarget
JB163459.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235128.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2985353	NA	coding protein	psRNATarget