ncRNA ID | novel_zma_miR3526 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr6:165652515-165652720 [+] |
Reference genome | RefGen_v4 |
Source | SRR2287031;SRR2089698 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGGGCUAUGAAAAAGUUGGGAGCG - 24 |
Stem-loop(if miRNA) |
--       U                      AA        A      C        -A     C       CG        A     U   -UA    AUCU   AGGGCUA GAAAAAGUUGGGAGCGCUUUAG  GAACUGUU GAGACA GUUUUUGU  UUUUC AAAAAAA  GAUUUAGG AAGAC UCU   GAGC    C   ||||||| ||||||||||||||||||||||  |||||||| |||||| ||||||||  ||||| |||||||  |||||||| ||||| |||   ||||   UCCCGAU CUUUUUUAAUCCUCGCGAAAUC  CUUGACAA CUCUGU CAAAAACA  AAAAG UUUUUUU  CUAAAUUC UUCUG AGA   CUCG    C AU       C                      CC        C      A        CA     U       AU        C     C   CCC    AAAA |
Stem-loop sequence | AGGGCUAUGAAAAAGUUGGGAGCGCUUUAGAAGAACUGUUAGAGACACGUUUUUGUAUUUUCCAAAAAAACGGAUUUAGGAAAGACUUCUUAGAGCAUCUCCAAAAGCUCCCCAGACGUCUUCCUUAAAUCUAUUUUUUUUGAAAAACACAAAAACAUGUCUCCAACAGUUCCCCUAAAGCGCUCCUAAUUUUUUCCUAGCCCUUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ050474.1 |
|
0.0 | TSA: Zea mays contig51594, mRNA sequence | NA | coding protein | psRNATarget |