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BaseInfo

ncRNA ID novel_zma_miR3526
Species Zea mays
Class miRNA
Genome position Chr6:165652515-165652720 [+]
Reference genome RefGen_v4
Source SRR2287031;SRR2089698
Length 24
Mature sequence(if miRNA) 1 - AGGGCUAUGAAAAAGUUGGGAGCG - 24
Stem-loop(if miRNA) --       U                      AA        A      C        -A     C       CG        A     U   -UA    AUCU
  AGGGCUA GAAAAAGUUGGGAGCGCUUUAG  GAACUGUU GAGACA GUUUUUGU  UUUUC AAAAAAA  GAUUUAGG AAGAC UCU   GAGC    C
  ||||||| ||||||||||||||||||||||  |||||||| |||||| ||||||||  ||||| |||||||  |||||||| ||||| |||   ||||
  UCCCGAU CUUUUUUAAUCCUCGCGAAAUC  CUUGACAA CUCUGU CAAAAACA  AAAAG UUUUUUU  CUAAAUUC UUCUG AGA   CUCG    C
AU       C                      CC        C      A        CA     U       AU        C     C   CCC    AAAA
Stem-loop sequence AGGGCUAUGAAAAAGUUGGGAGCGCUUUAGAAGAACUGUUAGAGACACGUUUUUGUAUUUUCCAAAAAAACGGAUUUAGGAAAGACUUCUUAGAGCAUCUCCAAAAGCUCCCCAGACGUCUUCCUUAAAUCUAUUUUUUUUGAAAAACACAAAAACAUGUCUCCAACAGUUCCCCUAAAGCGCUCCUAAUUUUUUCCUAGCCCUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ050474.1
ncRNA:24   GCGAGGGUUGAAAAAGUAUCGGGA   1
  ||=|||||||||||||||||||||
targets:255   CGUUCCCAACUUUUUCAUAGCCCU   278

0.0 TSA: Zea mays contig51594, mRNA sequence NA coding protein psRNATarget