Search result

BaseInfo

ncRNA ID	novel_zma_miR3524
Species	Zea mays
Class	miRNA
Genome position	Chr5:147482176-147482244 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287159;SRR1997865;SRR1997866
Length	24
Mature sequence(if miRNA)	1 - AAAAGUACUCGGCAAAGAAGGUUU - 24
Stem-loop(if miRNA)	--AA                A     U  UGAAG     AAGUACUCGGCAAAGA GGUUU GC     C     |||||||||||||||| ||||| ||     A     UUCGUGAGCCGUUUCU CCGAG CG     C GGAC                A     C  UGUGU
Stem-loop sequence	AAAAGUACUCGGCAAAGAAGGUUUUGCUGAAGCACUGUGUGCCGAGCCAUCUUUGCCGAGUGCUUCAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167714.1	ncRNA:24   UUUGGAAGAAACGGCUCAUGAAAA   1   ||=||||||||||||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	0.0	Sequence 5378 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239383.1	ncRNA:24   UUUGGAAGAAACGGCUCAUGAAAA   1   ||=||||||||||||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	0.0	Sequence 5378 from Patent EP2985353	NA	coding protein	psRNATarget
HI407253.1	ncRNA:24   UUUGGAAGAAACGGCUCAUGAAAA   1   ||=||||||||||||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	0.0	Sequence 5378 from Patent EP2074227	NA	coding protein	psRNATarget
EU974507.1	ncRNA:24   UUUG--GAAGAAACGGCUCAUGAAAA   1   *|||--|||||||||||||||||||| targets:440   UAACAGCUUCUUUGCCGAGUACUUUU   465 Target Full Sequence	0.0	Zea mays clone 451014 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB167233.1	ncRNA:24   UUUGGAAGAAACGGCUCAUGAAAA   1   **=||||||||||||||||||*|* targets:95   CUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	2.5	Sequence 4897 from Patent EP2559767	NA	coding protein	psRNATarget
HI406772.1	ncRNA:24   UUUGGAAGAAACGGCUCAUGAAAA   1   **=||||||||||||||||||*|* targets:95   CUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	2.5	Sequence 4897 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238902.1	ncRNA:24   UUUGGAAGAAACGGCUCAUGAAAA   1   **=||||||||||||||||||*|* targets:95   CUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	2.5	Sequence 4897 from Patent EP2985353	NA	coding protein	psRNATarget
EU957858.1	ncRNA:24   UUUG--GAAGAAACGGCUCAUGAAAA   1   *|||--|||*|||*|||||||||||| targets:1234   CAACGGCUUAUUUACCGAGUACUUUU   1259 Target Full Sequence	2.5	Zea mays clone 1627310 mRNA sequence	NA	coding protein	psRNATarget