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BaseInfo

ncRNA ID	novel_zma_miR3523
Species	Zea mays
Class	miRNA
Genome position	Chr5:146491713-146491833 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2089701
Length	24
Mature sequence(if miRNA)	98 - CCAUGUGUAUUGGGAAUAAUCGAA - 121
Stem-loop(if miRNA)	--      GC       C           AG          -U      AAAUCCCAAACA   CGGUUA  UCUCAAU CAUGUGGAUUG  UGGGAUUGGA  GAGUUU            A   ||||||  ||||||| |||||||||||  ||||||||||  ||||||            G   GCUAAU  AGGGUUA GUGUACCUAAC  ACCCUAACCU  UUUAAG            U AA      -A       U           CU          UU      AAUUAUUCAAAC
Stem-loop sequence	CGGUUAGCUCUCAAUCCAUGUGGAUUGAGUGGGAUUGGAUGAGUUUAAAUCCCAAACAAGUCAAACUUAUUAAGAAUUUUUUCCAAUCCCAUCCAAUCCAUGUGUAUUGGGAAUAAUCGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020542399.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:7180   UUCGGUUAUUCCCAAUACACAUGG   7203 Target Full Sequence	0.0	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008657578.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:7169   UUCGGUUAUUCCCAAUACACAUGG   7192 Target Full Sequence	0.0	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657579.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:7065   UUCGGUUAUUCCCAAUACACAUGG   7088 Target Full Sequence	0.0	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:1149   UUCGGUUAUUCCCAAUACACAUGG   1172 Target Full Sequence	0.0	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674021.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:3954   UUCGGUUAUUCCCAAUACACAUGG   3977 Target Full Sequence	0.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674025.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:3939   UUCGGUUAUUCCCAAUACACAUGG   3962 Target Full Sequence	0.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008674023.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:3821   UUCGGUUAUUCCCAAUACACAUGG   3844 Target Full Sequence	0.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674024.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:3807   UUCGGUUAUUCCCAAUACACAUGG   3830 Target Full Sequence	0.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:2824   UUCGGUUAUUCCCAAUACACAUGG   2847 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:2720   UUCGGUUAUUCCCAAUACACAUGG   2743 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:2420   UUCGGUUAUUCCCAAUACACAUGG   2443 Target Full Sequence	0.0	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:2132   UUCGGUUAUUCCCAAUACACAUGG   2155 Target Full Sequence	0.0	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
BT018903.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:1949   UUCGGUUAUUCCCAAUACACAUGG   1972 Target Full Sequence	0.0	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
XM_008645867.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:1872   UUCGGUUAUUCCCAAUACACAUGG   1895 Target Full Sequence	0.0	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553538.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:1806   UUCGGUUAUUCCCAAUACACAUGG   1829 Target Full Sequence	0.0	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:1539   UUCGGUUAUUCCCAAUACACAUGG   1562 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008659614.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:105   UUCGGUUAUUCCCAAUACACAUGG   128 Target Full Sequence	0.0	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:1450   UUCGGUUAUUCCCAAUACACAUGG   1473 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:1450   UUCGGUUAUUCCCAAUACACAUGG   1473 Target Full Sequence	0.0	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
NM_001148918.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:1386   UUCGGUUAUUCCCAAUACACAUGG   1409 Target Full Sequence	0.0	Zea mays nodulation homolog 1 (znod1), mRNA	NA	coding protein	psRNATarget
BT043378.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:1386   UUCGGUUAUUCCCAAUACACAUGG   1409 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds	NA	coding protein	psRNATarget
AY104167.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:1400   UUCGGUUAUUCCCAAUACACAUGG   1423 Target Full Sequence	0.0	Zea mays PCO062696 mRNA sequence	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:1048   UUCGGUUAUUCCCAAUACACAUGG   1071 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:1048   UUCGGUUAUUCCCAAUACACAUGG   1071 Target Full Sequence	0.0	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
AY103719.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:798   UUCGGUUAUUCCCAAUACACAUGG   821 Target Full Sequence	0.0	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
EU942557.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:487   UUCGGUUAUUCCCAAUACACAUGG   510 Target Full Sequence	0.0	Zea mays clone 1517970 mRNA sequence	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:39   UUCGGUUAUUCCCAAUACACAUGG   62 Target Full Sequence	0.0	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
HI403005.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:18   UUCGGUUAUUCCCAAUACACAUGG   41 Target Full Sequence	0.0	Sequence 1130 from Patent EP2074227	NA	coding protein	psRNATarget
JB163480.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:18   UUCGGUUAUUCCCAAUACACAUGG   41 Target Full Sequence	0.0	Sequence 1144 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235135.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:18   UUCGGUUAUUCCCAAUACACAUGG   41 Target Full Sequence	0.0	Sequence 1130 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:18   UUCGGUUAUUCCCAAUACACAUGG   41 Target Full Sequence	0.0	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
JB163551.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:18   UUCGGUUAUUCCCAAUACACAUGG   41 Target Full Sequence	0.0	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235149.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:18   UUCGGUUAUUCCCAAUACACAUGG   41 Target Full Sequence	0.0	Sequence 1144 from Patent EP2985353	NA	coding protein	psRNATarget
HI403019.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:18   UUCGGUUAUUCCCAAUACACAUGG   41 Target Full Sequence	0.0	Sequence 1144 from Patent EP2074227	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:18   UUCGGUUAUUCCCAAUACACAUGG   41 Target Full Sequence	0.0	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
JB163466.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:18   UUCGGUUAUUCCCAAUACACAUGG   41 Target Full Sequence	0.0	Sequence 1130 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:9   UUCGGUUAUUCCCAAUACACAUGG   32 Target Full Sequence	0.0	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
HI405878.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:9   UUCGGUUAUUCCCAAUACACAUGG   32 Target Full Sequence	0.0	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
JB166339.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:9   UUCGGUUAUUCCCAAUACACAUGG   32 Target Full Sequence	0.0	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
HI405877.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:7   UUCGGUUAUUCCCAAUACACAUGG   30 Target Full Sequence	0.0	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:7   UUCGGUUAUUCCCAAUACACAUGG   30 Target Full Sequence	0.0	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget
JB166338.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:7   UUCGGUUAUUCCCAAUACACAUGG   30 Target Full Sequence	0.0	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget
EZ100118.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||| targets:35   UUCGGUUAUUCCCAAUACACAUGG   58 Target Full Sequence	0.0	TSA: Zea mays contig35773, mRNA sequence	NA	coding protein	psRNATarget
BT066874.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||=|=||||||||||||||||||| targets:1878   UUUGGUUAUUCCCAAUACACAUGG   1901 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175969.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||=|=||||||||||||||||||| targets:1878   UUUGGUUAUUCCCAAUACACAUGG   1901 Target Full Sequence	0.0	Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA	NA	coding protein	psRNATarget
EU955633.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||=|=||||||||||||||||||| targets:1735   UUUGGUUAUUCCCAAUACACAUGG   1758 Target Full Sequence	0.0	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154031.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||=|=||||||||||||||||||| targets:1735   UUUGGUUAUUCCCAAUACACAUGG   1758 Target Full Sequence	0.0	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
NM_001157801.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=|||||||=||||||||||| targets:1755   UUCGGUUAUUCCUAAUACACAUGG   1778 Target Full Sequence	1.5	Zea mays Flavonoid 3-monooxygenase (LOC100273153), mRNA	NA	coding protein	psRNATarget
BT040331.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=|||||||=||||||||||| targets:1718   UUCGGUUAUUCCUAAUACACAUGG   1741 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0083E04 mRNA, complete cds	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=|||||=||||||||||||| targets:1335   UUCGGUUAUUUCCAAUACACAUGG   1358 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
EU962956.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||=|||| targets:1295   UUCGGUUAUUCCCAAUACAUAUGG   1318 Target Full Sequence	1.5	Zea mays clone 246872 mRNA sequence	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=|||||=||||||||||||| targets:1044   UUCGGUUAUUUCCAAUACACAUGG   1067 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=|||||=||||||||||||| targets:1044   UUCGGUUAUUUCCAAUACACAUGG   1067 Target Full Sequence	1.0	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||=|||| targets:166   UUCGGUUAUUCCCAAUACAUAUGG   189 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=|||||=||||||||||||| targets:11   UUCGGUUAUUUCCAAUACACAUGG   34 Target Full Sequence	1.0	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
HI403094.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||=|||| targets:18   UUCGGUUAUUCCCAAUACAUAUGG   41 Target Full Sequence	1.5	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
HI403043.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=|||||||||=||||||||| targets:18   UUCGGUUAUUCCCAGUACACAUGG   41 Target Full Sequence	1.5	Sequence 1168 from Patent EP2074227	NA	coding protein	psRNATarget
JB163555.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||=|||| targets:18   UUCGGUUAUUCCCAAUACAUAUGG   41 Target Full Sequence	1.5	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
JB163504.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=|||||||||=||||||||| targets:18   UUCGGUUAUUCCCAGUACACAUGG   41 Target Full Sequence	1.5	Sequence 1168 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235173.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=|||||||||=||||||||| targets:18   UUCGGUUAUUCCCAGUACACAUGG   41 Target Full Sequence	1.5	Sequence 1168 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||=|||| targets:18   UUCGGUUAUUCCCAAUACAUAUGG   41 Target Full Sequence	1.5	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||=|||| targets:18   UUCGGUUAUUCCCAAUACAUAUGG   41 Target Full Sequence	1.5	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||=|||| targets:18   UUCGGUUAUUCCCAAUACAUAUGG   41 Target Full Sequence	1.5	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||=|||| targets:18   UUCGGUUAUUCCCAAUACAUAUGG   41 Target Full Sequence	1.5	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008666492.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||* targets:3676   UUCGGUUAUUCCCAAUACACAUGA   3699 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666491.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||* targets:3671   UUCGGUUAUUCCCAAUACACAUGA   3694 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546709.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||* targets:3389   UUCGGUUAUUCCCAAUACACAUGA   3412 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008666493.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||* targets:3403   UUCGGUUAUUCCCAAUACACAUGA   3426 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU949831.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||* targets:936   UUCGGUUAUUCCCAAUACACAUGA   959 Target Full Sequence	1.0	Zea mays clone 447574 mRNA sequence	NA	coding protein	psRNATarget
EU942657.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||||||||||* targets:158   UUCGGUUAUUCCCAAUACACAUGA   181 Target Full Sequence	1.0	Zea mays clone 1527578 mRNA sequence	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=|||||=||||||||=|||| targets:3358   UUCGGUUAUUUCCAAUACAUAUGG   3381 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=|||||=||||||||=|||| targets:3327   UUCGGUUAUUUCCAAUACAUAUGG   3350 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=|||||=||||||||=|||| targets:3314   UUCGGUUAUUUCCAAUACAUAUGG   3337 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020545430.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   |||*=||||||||||||||||||| targets:5724   UUCAGUUAUUCCCAAUACACAUGG   5747 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||*|||||||| targets:1119   UUCGGUUAUUCCCAAAACACAUGG   1142 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||*|||||||| targets:1119   UUCGGUUAUUCCCAAAACACAUGG   1142 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||*|||||||| targets:1001   UUCGGUUAUUCCCAAAACACAUGG   1024 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020552750.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=|||||||||||||||||*| targets:57   UUCGGUUAUUCCCAAUACACAUAG   80 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654238 (LOC103654238), mRNA	NA	coding protein	psRNATarget
BT069115.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||*|||||||| targets:447   UUCGGUUAUUCCCAAAACACAUGG   470 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||*|||||||| targets:794   UUCGGUUAUUCCCAAAACACAUGG   817 Target Full Sequence	1.5	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU951448.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||*|||||||| targets:665   UUCGGUUAUUCCCAAAACACAUGG   688 Target Full Sequence	1.5	Zea mays clone 701961 mRNA sequence	NA	coding protein	psRNATarget
JB166302.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||*|||||||| targets:9   UUCGGUUAUUCCCAAAACACAUGG   32 Target Full Sequence	1.5	Sequence 3966 from Patent EP2559767	NA	coding protein	psRNATarget
HI405841.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||*|||||||| targets:9   UUCGGUUAUUCCCAAAACACAUGG   32 Target Full Sequence	1.5	Sequence 3966 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237971.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||*|||||||| targets:9   UUCGGUUAUUCCCAAAACACAUGG   32 Target Full Sequence	1.5	Sequence 3966 from Patent EP2985353	NA	coding protein	psRNATarget
EZ101889.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||||=||||||||||*|||||||| targets:14   UUCGGUUAUUCCCAAAACACAUGG   37 Target Full Sequence	1.5	TSA: Zea mays contig37545, mRNA sequence	NA	coding protein	psRNATarget
JB166325.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   **||=||||||||||||||||||| targets:9   AACGGUUAUUCCCAAUACACAUGG   32 Target Full Sequence	0.0	Sequence 3989 from Patent EP2559767	NA	coding protein	psRNATarget
HI405864.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   **||=||||||||||||||||||| targets:9   AACGGUUAUUCCCAAUACACAUGG   32 Target Full Sequence	0.0	Sequence 3989 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237994.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   **||=||||||||||||||||||| targets:9   AACGGUUAUUCCCAAUACACAUGG   32 Target Full Sequence	0.0	Sequence 3989 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238032.1	ncRNA:22   GCUAAUAAGGGUUAUGUGUACC   1   ||=||||||||||||||||||| targets:1   CGGUUAUUCCCAAUACACAUGG   22 Target Full Sequence	0.0	Sequence 4027 from Patent EP2985353	NA	coding protein	psRNATarget
JB166363.1	ncRNA:22   GCUAAUAAGGGUUAUGUGUACC   1   ||=||||||||||||||||||| targets:1   CGGUUAUUCCCAAUACACAUGG   22 Target Full Sequence	0.0	Sequence 4027 from Patent EP2559767	NA	coding protein	psRNATarget
HI405902.1	ncRNA:22   GCUAAUAAGGGUUAUGUGUACC   1   ||=||||||||||||||||||| targets:1   CGGUUAUUCCCAAUACACAUGG   22 Target Full Sequence	0.0	Sequence 4027 from Patent EP2074227	NA	coding protein	psRNATarget
HI405903.1	ncRNA:22   GCUAAUAAGGGUUAUGUGUACC   1   ||=||||||||||||||||||| targets:1   CGGUUAUUCCCAAUACACAUGG   22 Target Full Sequence	0.0	Sequence 4028 from Patent EP2074227	NA	coding protein	psRNATarget
HI405893.1	ncRNA:22   GCUAAUAAGGGUUAUGUGUACC   1   ||=||||||||||||||||||| targets:1   CGGUUAUUCCCAAUACACAUGG   22 Target Full Sequence	0.0	Sequence 4018 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238033.1	ncRNA:22   GCUAAUAAGGGUUAUGUGUACC   1   ||=||||||||||||||||||| targets:1   CGGUUAUUCCCAAUACACAUGG   22 Target Full Sequence	0.0	Sequence 4028 from Patent EP2985353	NA	coding protein	psRNATarget
JB166364.1	ncRNA:22   GCUAAUAAGGGUUAUGUGUACC   1   ||=||||||||||||||||||| targets:1   CGGUUAUUCCCAAUACACAUGG   22 Target Full Sequence	0.0	Sequence 4028 from Patent EP2559767	NA	coding protein	psRNATarget
JB166350.1	ncRNA:22   GCUAAUAAGGGUUAUGUGUACC   1   ||=||||||||||||||||||| targets:1   CGGUUAUUCCCAAUACACAUGG   22 Target Full Sequence	0.0	Sequence 4014 from Patent EP2559767	NA	coding protein	psRNATarget
JB166354.1	ncRNA:22   GCUAAUAAGGGUUAUGUGUACC   1   ||=||||||||||||||||||| targets:1   CGGUUAUUCCCAAUACACAUGG   22 Target Full Sequence	0.0	Sequence 4018 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238019.1	ncRNA:22   GCUAAUAAGGGUUAUGUGUACC   1   ||=||||||||||||||||||| targets:1   CGGUUAUUCCCAAUACACAUGG   22 Target Full Sequence	0.0	Sequence 4014 from Patent EP2985353	NA	coding protein	psRNATarget
HI405889.1	ncRNA:22   GCUAAUAAGGGUUAUGUGUACC   1   ||=||||||||||||||||||| targets:1   CGGUUAUUCCCAAUACACAUGG   22 Target Full Sequence	0.0	Sequence 4014 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238023.1	ncRNA:22   GCUAAUAAGGGUUAUGUGUACC   1   ||=||||||||||||||||||| targets:1   CGGUUAUUCCCAAUACACAUGG   22 Target Full Sequence	0.0	Sequence 4018 from Patent EP2985353	NA	coding protein	psRNATarget
BT069961.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ||=|=||||||||*|||||||||| targets:30   UUUGGUUAUUCCCUAUACACAUGG   53 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0347H16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658927.2	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   |*||=|||||||||||=||||||| targets:221   UCCGGUUAUUCCCAAUGCACAUGG   244 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103636575 (LOC103636575), mRNA	NA	coding protein	psRNATarget
EZ055500.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   **=|=||||||||||||||||||| targets:69   GCUGGUUAUUCCCAAUACACAUGG   92 Target Full Sequence	0.0	TSA: Zea mays contig56622, mRNA sequence	NA	coding protein	psRNATarget
AY112141.1	ncRNA:24   AAGCUAAUAAGGGUUAUGUGUACC   1   ***|=||||||||||||||||||| targets:151   NNNGGUUAUUCCCAAUACACAUGG   174 Target Full Sequence	0.0	Zea mays CL24213_1 mRNA sequence	NA	coding protein	psRNATarget