Search result

BaseInfo

ncRNA ID novel_zma_miR3522
Species Zea mays
Class miRNA
Genome position Chr5:133575173-133575271 [+]
Reference genome RefGen_v4
Source SRR2287031;SRR2287159
Length 21
Mature sequence(if miRNA) 1 - GAGGUCUGGUUAGAAAGGGGC - 21
Stem-loop(if miRNA) -- AG   UG    GAA      UUAAUUC    A    UU   AGG  UACA
  G  GUC  GUUA   AGGGGC       UCUG UUGC  UGG   CC    U
  |  |||  ||||   ||||||       |||| ||||  |||   ||
  C  UAG  CAAU   UUUCUG       AGAC AACG  ACC   GG    U
AU CU   GU    -AG      ----UGU    -    CC   -AA  UUUA
Stem-loop sequence GAGGUCUGGUUAGAAAGGGGCUUAAUUCUCUGAUUGCUUUGGAGGCCUACAUUAUUUGGAACCACCGCAACAGAUGUGUCUUUGAUAACUGGAUUCCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020551711.1
ncRNA:21   CGGGGAAAGAUUGGUCUGGAG   1
  |||||||||||||||||||*|
targets:4274   GCCCCUUUCUAACCAGACCAC   4294

1.5 PREDICTED: Zea mays hypothetical protein (LOC100384203), transcript variant X4, mRNA NA coding protein psRNATarget