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BaseInfo

ncRNA ID	novel_zma_miR3519
Species	Zea mays
Class	miRNA
Genome position	Chr5:107592352-107592456 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287160;SRR2287162;SRR2287163;SRR2287164;SRR2287165;SRR1997865;SRR5451003;SRR5451004;SRR5451005;SRR1997866
Length	24
Mature sequence(if miRNA)	82 - AUACUAAAGUGGAAUAAAAUGGAG - 105
Stem-loop(if miRNA)	--   A                CAC        C              A      CCA UUUAUUCCACUUUAGU   UAAAUUGU AAAUAUGGAAACUA AAUA   ||| ||||||||||||||||   |||||||| |||||||||||||| |||G   GGU AAAUAAGGUGAAAUCA   AUUUAACG UUUAUACCUUUGAU UUGA GA   A                UAU        U              A
Stem-loop sequence	CCAAUUUAUUCCACUUUAGUCACUAAAUUGUCAAAUAUGGAAACUAAAAUAGAGUUAUAGUUUCCAUAUUUUGCAAUUUAUAUACUAAAGUGGAAUAAAAUGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163502.1	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAUA   1   ||=||||||=|||||=|||||||| targets:34   CUUCAUUUUGUUCCAUUUUAGUAU   57 Target Full Sequence	2.5	Sequence 1166 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235171.1	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAUA   1   ||=||||||=|||||=|||||||| targets:34   CUUCAUUUUGUUCCAUUUUAGUAU   57 Target Full Sequence	2.5	Sequence 1166 from Patent EP2985353	NA	coding protein	psRNATarget
HI403041.1	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAUA   1   ||=||||||=|||||=|||||||| targets:34   CUUCAUUUUGUUCCAUUUUAGUAU   57 Target Full Sequence	2.5	Sequence 1166 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAUA   1   ||||||||||||||||||||||** targets:487   CUCCAUUUUAUUCCACUUUAGUUC   510 Target Full Sequence	2.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB170741.1	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAUA   1   ||=||||||=|||||=|||||||| targets:10   CUUCAUUUUGUUCCAUUUUAGUAU   33 Target Full Sequence	2.5	Sequence 8405 from Patent EP2559767	NA	coding protein	psRNATarget
HI410280.1	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAUA   1   ||=||||||=|||||=|||||||| targets:10   CUUCAUUUUGUUCCAUUUUAGUAU   33 Target Full Sequence	2.5	Sequence 8405 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242410.1	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAUA   1   ||=||||||=|||||=|||||||| targets:10   CUUCAUUUUGUUCCAUUUUAGUAU   33 Target Full Sequence	2.5	Sequence 8405 from Patent EP2985353	NA	coding protein	psRNATarget
EU957896.1	ncRNA:24   GAG-GUAAAAUAAGGUGAAAUCA-UA   1   ||=-|||||||||||||||||||-|| targets:1274   CUUACAUUUUAUUCCACUUUAGUUAU   1299 Target Full Sequence	3.0	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
XM_008660555.2	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAUA   1   ||*|||||||||||||||||||** targets:1922   CUACAUUUUAUUCCACUUUAGUUC   1945 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA	NA	coding protein	psRNATarget