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BaseInfo

ncRNA ID novel_zma_miR3518
Species Zea mays
Class miRNA
Genome position Chr5:102007653-102007747 [+]
Reference genome RefGen_v4
Source SRR2287031;SRR1997866
Length 24
Mature sequence(if miRNA) 1 - AGAGAACGUUGCUGGAGAUAGCCU - 24
Stem-loop(if miRNA) --              GAGAU    UUAAAUA  GCUAGGAAAGUUUUG
  AGAGAACGUUGCUG     AGCC       CC               A
  ||||||||||||||     ||||       ||               U
  UUUUUUGUAAUGAC     UCGG       CG               A
CU              --AGU    --UAGGA  AGUCUAUUAGUUUAU
Stem-loop sequence AGAGAACGUUGCUGGAGAUAGCCUUAAAUACCGCUAGGAAAGUUUUGAUAUAUUUGAUUAUCUGAGCAGGAUGGCUUGACAGUAAUGUUUUUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT037372.1
ncRNA:24   UCCGAUAGAGGUCGUUGCAAGAGA   1
  |||||=|||||||||||||*||||
targets:1305   AGGCUGUCUCCAGCAACGUCCUCU   1328

2.5 Zea mays full-length cDNA clone ZM_BFb0166L08 mRNA, complete cds NA coding protein psRNATarget
NM_001143201.1
ncRNA:24   UCCGAUAGAGGUCGUUGCAAGAGA   1
  |||||=|||||||||||||*||||
targets:1305   AGGCUGUCUCCAGCAACGUCCUCU   1328

2.5 Zea mays Transmembrane ascorbate ferrireductase 1 (cl8731_1(323)), mRNA NA coding protein psRNATarget
XM_008647679.2
ncRNA:24   UCCGAUAGAGGUCGUUGCAAGAGA   1
  |||||=|||||||||||||*||||
targets:1598   AGGCUGUCUCCAGCAACGUCCUCU   1621

2.5 PREDICTED: Zea mays serine/threonine-protein kinase OXI1 (LOC103627390), mRNA NA coding protein psRNATarget
XM_008680895.2
ncRNA:24   UCCGAUAGAGGUCGUUGCAAGAGA   1
  ||*||=||||||||||||||||||
targets:2620   AGACUGUCUCCAGCAACGUUCUCU   2643

1.0 PREDICTED: Zea mays signal peptidase complex catalytic subunit SEC11C (LOC103654093), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008680896.2
ncRNA:24   UCCGAUAGAGGUCGUUGCAAGAGA   1
  ||*||=||||||||||||||||||
targets:2792   AGACUGUCUCCAGCAACGUUCUCU   2815

1.0 PREDICTED: Zea mays signal peptidase complex catalytic subunit SEC11C (LOC103654093), transcript variant X3, mRNA NA coding protein psRNATarget
HI403327.1
ncRNA:24   UCCGAUAGAGGUCGUUGCAAGAGA   1
  |||=|=|||||||||||||*||||
targets:30   AGGUUGUCUCCAGCAACGUCCUCU   53

2.5 Sequence 1452 from Patent EP2074227 NA coding protein psRNATarget
LQ235457.1
ncRNA:24   UCCGAUAGAGGUCGUUGCAAGAGA   1
  |||=|=|||||||||||||*||||
targets:30   AGGUUGUCUCCAGCAACGUCCUCU   53

2.5 Sequence 1452 from Patent EP2985353 NA coding protein psRNATarget
JB163788.1
ncRNA:24   UCCGAUAGAGGUCGUUGCAAGAGA   1
  |||=|=|||||||||||||*||||
targets:30   AGGUUGUCUCCAGCAACGUCCUCU   53

2.5 Sequence 1452 from Patent EP2559767 NA coding protein psRNATarget
BT061237.1
ncRNA:24   UCCGAUAGAGGUCGUUGCAAGAGA   1
  ||*||=||||||*|||||||||||
targets:1148   AGACUGUCUCCACCAACGUUCUCU   1171

2.5 Zea mays full-length cDNA clone ZM_BFb0125H23 mRNA, complete cds NA coding protein psRNATarget
NM_001174271.1
ncRNA:24   UCCGAUAGAGGUCGUUGCAAGAGA   1
  ||*||=||||||*|||||||||||
targets:1148   AGACUGUCUCCACCAACGUUCUCU   1171

2.5 Zea mays uncharacterized LOC100381430 (LOC100381430), mRNA NA coding protein psRNATarget
XM_008671521.2
ncRNA:24   UCCGAUAGAGGUCGUUGCAAGAGA   1
  ||*|*=||||=|||||||||||||
targets:3930   AGACGGUCUCUAGCAACGUUCUCU   3953

2.0 PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At1g06840 (LOC103646897), mRNA NA coding protein psRNATarget
BT061855.1
ncRNA:24   UCCGAUAGAGGUCGUUGCAAGAGA   1
  ***=||||||||*|||||||||||
targets:915   UUUUUAUCUCCAACAACGUUCUCU   938

1.5 Zea mays full-length cDNA clone ZM_BFb0189G14 mRNA, complete cds NA coding protein psRNATarget
NM_001174453.1
ncRNA:24   UCCGAUAGAGGUCGUUGCAAGAGA   1
  ***=||||||||*|||||||||||
targets:915   UUUUUAUCUCCAACAACGUUCUCU   938

1.5 Zea mays uncharacterized LOC100381638 (LOC100381638), mRNA NA coding protein psRNATarget