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BaseInfo

ncRNA ID	novel_zma_miR3510
Species	Zea mays
Class	miRNA
Genome position	Chr9:155897090-155897210 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647343;SRR2647385;SRR2647386;SRR1583941;SRR2647389;SRR2647391;SRR2647467;SRR1583942
Length	24
Mature sequence(if miRNA)	98 - AGAGCUAGUUUGGAAACCCCAAUU - 121
Stem-loop(if miRNA)	--  A               C      -A   AAG            AC  -   U    UA   AG GCUAGUUUGGAAACC CAAUUU  CCA   GAUUUCUAUUUU  CA AGG AAAU  G   || ||||||||||||||| ||||||  |||   ||||||||||||  || ||| ||||   UC CGAUCAAAUCUUUGG GUUAAA  GGU   UUAAAGAUAAAA  GU UCC UUUA  U AA  C               U      AA   -CA            GA  A   U    UU
Stem-loop sequence	AGAGCUAGUUUGGAAACCCCAAUUUACCAAAGGAUUUCUAUUUUACCAAGGUAAAUUAGUUUAUUUUCCUAUGAGAAAAUAGAAAUUACUGGAAAAAUUGUGGUUUCUAAACUAGCCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU951374.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||*||||||||||||||||||*|| targets:414   AAAUGGGGUUUCCAAACUAGCCCU   437 Target Full Sequence	1.5	Zea mays clone 697858 mRNA sequence	NA	coding protein	psRNATarget
XM_020550081.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||||*|*||||||||||||||||| targets:2430   AAUUUGAGUUUCCAAACUAGCUCU   2453 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109944788 (LOC109944788), mRNA	NA	coding protein	psRNATarget
BT088407.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||*||||*||||||||||||=||| targets:1103   AAAUGGGAUUUCCAAACUAGUUCU   1126 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0179M16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676336.2	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   =|||*|*||||||||||||||||| targets:4377   GAUUUGAGUUUCCAAACUAGCUCU   4400 Target Full Sequence	1.0	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008676333.2	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   =|||*|*||||||||||||||||| targets:4391   GAUUUGAGUUUCCAAACUAGCUCU   4414 Target Full Sequence	1.0	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676335.2	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   =|||*|*||||||||||||||||| targets:4404   GAUUUGAGUUUCCAAACUAGCUCU   4427 Target Full Sequence	1.0	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ069250.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||||*|||*||||||||||||*|| targets:156   AAUUUGGGGUUCCAAACUAGCCCU   179 Target Full Sequence	2.5	TSA: Zea mays contig04885, mRNA sequence	NA	coding protein	psRNATarget
EU947743.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||*|||||||*||||||||||*|| targets:118   AAAUGGGGUUGCCAAACUAGCACU   141 Target Full Sequence	2.5	Zea mays clone 356079 mRNA sequence	NA	coding protein	psRNATarget
EU949735.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||*|||||||*||||||||||*|| targets:169   AAAUGGGGUUGCCAAACUAGCACU   192 Target Full Sequence	2.5	Zea mays clone 442739 mRNA sequence	NA	coding protein	psRNATarget
XM_008660198.2	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||||*|||*||||||||||||*|| targets:1003   AAUUUGGGGUUCCAAACUAGCCCU   1026 Target Full Sequence	2.5	PREDICTED: Zea mays ER membrane protein complex subunit 7-like protein (LOC100277198), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020537827.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   |||*|*|*|||||||||||||||| targets:23   AAUAGAGAUUUCCAAACUAGCUCU   46 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103625780 (LOC103625780), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544094.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||*|*||||||||||||||||*|| targets:1306   AAAUAGGGUUUCCAAACUAGCCCU   1329 Target Full Sequence	1.5	PREDICTED: Zea mays 3-ketoacyl-CoA synthase 6 (LOC103638222), mRNA	NA	coding protein	psRNATarget
XM_020537826.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   |||*|*|*|||||||||||||||| targets:23   AAUAGAGAUUUCCAAACUAGCUCU   46 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103625780 (LOC103625780), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544055.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||*||||*|||||||||||||*|| targets:1888   AAAUGGGAUUUCCAAACUAGCCCU   1911 Target Full Sequence	2.5	PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008662239.2	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||*||||*|||||||||||||*|| targets:1908   AAAUGGGAUUUCCAAACUAGCCCU   1931 Target Full Sequence	2.5	PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956611.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||*|||||||*||||||||||*|| targets:1503   AAAUGGGGUUGCCAAACUAGCCCU   1526 Target Full Sequence	2.5	Zea mays clone 1568093 mRNA sequence	NA	coding protein	psRNATarget
XM_020547541.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||*|||||||*||||||||||*|| targets:1964   AAAUGGGGUUCCCAAACUAGCCCU   1987 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   =|||*|*||||||||||||||*|| targets:88   GAUUUGAGUUUCCAAACUAGCCCU   111 Target Full Sequence	2.5	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
EU960900.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||*|*|*||||=|||||||||||| targets:650   AAAUAGAGUUUUCAAACUAGCUCU   673 Target Full Sequence	2.5	Zea mays clone 229464 cell growth defect factor 2 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155347.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||*|*|*||||=|||||||||||| targets:650   AAAUAGAGUUUUCAAACUAGCUCU   673 Target Full Sequence	2.5	Zea mays cell growth defect factor 2 (LOC100282436), mRNA	NA	coding protein	psRNATarget
XM_008680397.2	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   ||*|*|||||*|||||=||||||| targets:1691   AAAUAGGGUUGCCAAAUUAGCUCU   1714 Target Full Sequence	2.5	PREDICTED: Zea mays exocyst complex component EXO70A1 (LOC103653505), mRNA	NA	coding protein	psRNATarget
XM_008679616.2	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   =|||*|*||||||||||||||*|| targets:1220   GAUUUGAGUUUCCAAACUAGCCCU   1243 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103652675 (LOC103652675), mRNA	NA	coding protein	psRNATarget
XM_008670635.2	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   *|||*|*|||||*||||||||||| targets:89   CAUUUGAGUUUCAAAACUAGCUCU   112 Target Full Sequence	2.5	PREDICTED: Zea mays ABC transporter I family member 1 (LOC103645914), mRNA	NA	coding protein	psRNATarget
XM_020545978.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   |||--|*|||*||||||||||||| targets:710   AAU--GAGUUGCCAAACUAGCUCU   731 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100303977 (LOC100303977), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545979.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   |||--|*|||*||||||||||||| targets:711   AAU--GAGUUGCCAAACUAGCUCU   732 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100303977 (LOC100303977), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020545753.1	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   |||--|*|||*||||||||||||| targets:968   AAU--GAGUUGCCAAACUAGCUCU   989 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100274490 (LOC100274490), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_008665037.2	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   |||--|*|||*||||||||||||| targets:973   AAU--GAGUUGCCAAACUAGCUCU   994 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100274490 (LOC100274490), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008665038.2	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   |||--|*|||*||||||||||||| targets:975   AAU--GAGUUGCCAAACUAGCUCU   996 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100274490 (LOC100274490), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008665040.2	ncRNA:24   UUAACCCCAAAGGUUUGAUCGAGA   1   |||--|*|||*||||||||||||| targets:1667   AAU--GAGUUGCCAAACUAGCUCU   1688 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100274490 (LOC100274490), transcript variant X8, mRNA	NA	coding protein	psRNATarget