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BaseInfo

ncRNA ID	novel_zma_miR3508
Species	Zea mays
Class	miRNA
Genome position	Chr5:3168011-3168108 [-]
Reference genome	RefGen_v4
Source	SRR2287031
Length	23
Mature sequence(if miRNA)	76 - ACGCGGUGGACGCAUGCUGGUCG - 98
Stem-loop(if miRNA)	--     -    -AC  AU      C -A GAGACACACCAGUUCAGGCUC   ACGCG GUGG   GC  GCUGGU G  G                     A   ||||| ||||   ||  |||||| |  |                     C   UGCGC CACC   GU  ACGGCC G  C                     A AC     A    CCC  -G      - GU GUGCAACCCGGUCGCGCUGUG
Stem-loop sequence	ACGCGGUGGACGCAUGCUGGUCGAGGAGACACACCAGUUCAGGCUCACAGUGUCGCGCUGGCCCAACGUGCUGGCCGGCAGUGCCCCCACACGCGUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001155424.1	ncRNA:23   GCUGGUCGUACGCAGGUGGCGCA   1   ||||||||||||||||||||||| targets:977   CGACCAGCAUGCGUCCACCGCGU   999 Target Full Sequence	0.0	Zea mays Heavy metal transport/detoxification superfamily protein (cl21246_1a), mRNA	NA	coding protein	psRNATarget
EU961219.1	ncRNA:23   GCUGGUCGUACGCAGGUGGCGCA   1   ||||||||||||||||||||||| targets:977   CGACCAGCAUGCGUCCACCGCGU   999 Target Full Sequence	0.0	Zea mays clone 233592 metal ion binding protein mRNA, complete cds	NA	coding protein	psRNATarget
EU943818.1	ncRNA:23   GCUGGUCGUACGCAGGUGGCGCA   1   ||||||||||||||||||||=|| targets:507   CGACCAGCAUGCGUCCACCGUGU   529 Target Full Sequence	1.5	Zea mays clone 1688513 mRNA sequence	NA	coding protein	psRNATarget
NM_001157677.2	ncRNA:23   GCUGGUCGUACGCAGGUGGCGCA   1   ||||||||||||||||||||=|| targets:773   CGACCAGCAUGCGUCCACCGUGU   795 Target Full Sequence	1.5	Zea mays metal ion binding protein (LOC100284782), mRNA	NA	coding protein	psRNATarget
EU969666.1	ncRNA:23   GCUGGUCGUACGCAGGUGGCGCA   1   ||||||||||||||||||||=|| targets:795   CGACCAGCAUGCGUCCACCGUGU   817 Target Full Sequence	1.5	Zea mays clone 333772 metal ion binding protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008662467.2	ncRNA:23   GCUGGUCGUACGCAGGUGGCGCA   1   **=||*||*|||||||||||||| targets:948   GUGCCUGCCUGCGUCCACCGCGU   970 Target Full Sequence	2.0	PREDICTED: Zea mays 2-oxoglutarate-dependent dioxygenase AOP2 (LOC103639745), mRNA	NA	coding protein	psRNATarget