Search result

BaseInfo

ncRNA ID novel_zma_miR3506
Species Zea mays
Class miRNA
Genome position Chr5:30133812-30133905 [-]
Reference genome RefGen_v4
Source SRR2287031;SRR4237221
Length 23
Mature sequence(if miRNA) 1 - AGAAGCGCACAGAUGAAGUCGGG - 23
Stem-loop(if miRNA) --     G   G                    G  G  G       U
  CGGCU CAU UGUGUGCUUCUCUUCUCUUA GU GG UGCUAAG G
  ||||| ||| |||||||||||||||||||| || || |||||||
  GCUGA GUA ACACGCGAAGAGAAGAGAAU CA CC AUGAUUC A
GG     A   G                    A  G  G       U
Stem-loop sequence CGGCUGCAUGUGUGUGCUUCUCUUCUCUUAGGUGGGGUGCUAAGUGAUCUUAGUAGCCGACAUAAGAGAAGAGAAGCGCACAGAUGAAGUCGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:23   GGGCUGAAGUAGACACGCGAAGA   1
  ||||=|||=||||||||||||||
targets:3266   CCCGGCUUUAUCUGUGCGCUUCU   3288

2.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:23   GGGCUGAAGUAGACACGCGAAGA   1
  ||||=|||=||||||||||||||
targets:3404   CCCGGCUUUAUCUGUGCGCUUCU   3426

2.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget