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BaseInfo

ncRNA ID	novel_zma_miR3501
Species	Zea mays
Class	miRNA
Genome position	Chr5:71416727-71416794 [-]
Reference genome	RefGen_v4
Source	SRR2287031
Length	21
Mature sequence(if miRNA)	1 - CCCCUCCAAUCCCCUCUGGUU - 21
Stem-loop(if miRNA)	--      AA    A      C       GAAUA   CCGGAG  GAUU GAGGGG UAAAAUU     A   ||||||  |||| |||||| |||||||   GGUCUC  CUAA CUCCCC AUUUUAG     G UU      CC    C      A       AGGAA
Stem-loop sequence	CCGGAGAAGAUUAGAGGGGCUAAAAUUGAAUAAGAAGGAGAUUUUAACCCCUCCAAUCCCCUCUGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT065170.1	ncRNA:21   UUGGUCUCCCCUAACCUCCCC   1   |||||||||||=||||||||* targets:620   AACCAGAGGGGGUUGGAGGGA   640 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   UUGGUCUCCCCUAACCUCCCC   1   |||||||||||=||||||||* targets:1500   AACCAGAGGGGGUUGGAGGGA   1520 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   UUGGUCUCCCCUAACCUCCCC   1   |||||||||||=||||||||* targets:1520   AACCAGAGGGGGUUGGAGGGA   1540 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   UUGGUCUCCCCUAACCUCCCC   1   |||||||||||=||||||||* targets:1544   AACCAGAGGGGGUUGGAGGGA   1564 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   UUGGUCUCCCCUAACCUCCCC   1   |||||||||||=||||||||* targets:1577   AACCAGAGGGGGUUGGAGGGA   1597 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550478.1	ncRNA:21   UUGGUCUCCCCUAACCUCCCC   1   ||||=|||*|||||||||||| targets:2100   AACCGGAGAGGAUUGGAGGGG   2120 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA	NA	coding protein	psRNATarget
XM_008651784.2	ncRNA:21   UUGGUCUCCCCUAACCUCCCC   1   ||||=|||||||||*|||||| targets:671   AACCGGAGGGGAUUAGAGGGG   691 Target Full Sequence	2.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008651781.2	ncRNA:21   UUGGUCUCCCCUAACCUCCCC   1   ||||=|||||||||*|||||| targets:671   AACCGGAGGGGAUUAGAGGGG   691 Target Full Sequence	2.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008651780.2	ncRNA:21   UUGGUCUCCCCUAACCUCCCC   1   ||||=|||||||||*|||||| targets:671   AACCGGAGGGGAUUAGAGGGG   691 Target Full Sequence	2.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651782.2	ncRNA:21   UUGGUCUCCCCUAACCUCCCC   1   ||||=|||||||||*|||||| targets:671   AACCGGAGGGGAUUAGAGGGG   691 Target Full Sequence	2.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020543912.1	ncRNA:21   UUGGUCUCCCCUAACCUCCCC   1   ||||=*||||||||||||||| targets:4063   AACCGAAGGGGAUUGGAGGGG   4083 Target Full Sequence	2.0	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   UUGGUCUCCCCUAACCUCCCC   1   *|||=*||||||||||||||* targets:967   UACCGAAGGGGAUUGGAGGGA   987 Target Full Sequence	3.0	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget