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BaseInfo

ncRNA ID	novel_zma_miR3496
Species	Zea mays
Class	miRNA
Genome position	Chr5:183015824-183015876 [-]
Reference genome	RefGen_v4
Source	SRR2287031
Length	24
Mature sequence(if miRNA)	30 - GCCAUAGGCUGUGGCGGCGAGCUG - 53
Stem-loop(if miRNA)	--                G          GCCAUAGGCUGUGGCG CGAGCUGU   |||||||||||||||| |||||||G   CGGUAUCCGACACCGC GCUCGAUU CG                G
Stem-loop sequence	GCCAUAGGCUGUGGCGGCGAGCUGUGUUAGCUCGGCGCCACAGCCUAUGGCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008649330.2	ncRNA:24   GUCGAGCGGCGGUGUCGGAUACCG   1   =|*||||*|||||||||||||||| targets:6   UACCUCGGCGCCACAGCCUAUGGC   29 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273460 (LOC100273460), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649328.2	ncRNA:24   GUCGAGCGGCGGUGUCGGAUACCG   1   =|*||||*|||||||||||||||| targets:4   UACCUCGGCGCCACAGCCUAUGGC   27 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273460 (LOC100273460), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   GUCGAGCGGCGGUGUCGGAUACCG   1   ||*||||*|||||=|||||||||| targets:1303   CACCUCGGCGCCAUAGCCUAUGGC   1326 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   GUCGAGCGGCGGUGUCGGAUACCG   1   ||*||||*|||||=|||||||||| targets:1301   CACCUCGGCGCCAUAGCCUAUGGC   1324 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   GUCGAGCGGCGGUGUCGGAUACCG   1   ||*||||*|||||=|||||||||| targets:1360   CACCUCGGCGCCAUAGCCUAUGGC   1383 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   GUCGAGCGGCGGUGUCGGAUACCG   1   ||*||||*|||||=|||||||||| targets:1360   CACCUCGGCGCCAUAGCCUAUGGC   1383 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI405915.1	ncRNA:24   GUCGAGCGGCGGUGUCGGAUACCG   1   =|*||||*||||||||=||||||| targets:94   UACCUCGGCGCCACAGUCUAUGGC   117 Target Full Sequence	2.5	Sequence 4040 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238045.1	ncRNA:24   GUCGAGCGGCGGUGUCGGAUACCG   1   =|*||||*||||||||=||||||| targets:94   UACCUCGGCGCCACAGUCUAUGGC   117 Target Full Sequence	2.5	Sequence 4040 from Patent EP2985353	NA	coding protein	psRNATarget
JB166376.1	ncRNA:24   GUCGAGCGGCGGUGUCGGAUACCG   1   =|*||||*||||||||=||||||| targets:94   UACCUCGGCGCCACAGUCUAUGGC   117 Target Full Sequence	2.5	Sequence 4040 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008666663.2	ncRNA:24   GUCGAGCGGCGGUGUCGGAUACCG   1   =|*||||*|||||=|||||||||| targets:863   UACCUCGGCGCCAUAGCCUAUGGC   886 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget