Search result

BaseInfo

ncRNA ID novel_zma_miR3494
Species Zea mays
Class miRNA
Genome position Chr5:205196640-205196698 [-]
Reference genome RefGen_v4
Source SRR2287031;SRR2287161
Length 24
Mature sequence(if miRNA) 1 - GUAUGACAUGUGGGGCCAGUGGCA - 24
Stem-loop(if miRNA) --      A  --G      AG      UUU
  CCACUG GU   GCAUGU  GUACAU   U
  |||||| ||   ||||||  ||||||   U
  GGUGAC CG   UGUACA  UAUGUG   G
AC      -  GGG      -G      UGU
Stem-loop sequence CCACUGAGUGGCAUGUAGGUACAUUUUUUGUGUGUGUAUGACAUGUGGGGCCAGUGGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU945728.1
ncRNA:24   ACGGUGACCGGGGUGUACAGUAUG   1
  |||||||||=||||||||||||||
targets:1047   UGCCACUGGUCCCACAUGUCAUAC   1070

1.0 Zea mays clone 283792 mRNA sequence NA coding protein psRNATarget
BT040698.1
ncRNA:24   ACGGUGACCGGGGUGUACAGUAUG   1
  ||||||||||=|||||||||||||
targets:652   UGCCACUGGCUCCACAUGUCAUAC   675

1.0 Zea mays full-length cDNA clone ZM_BFc0119B19 mRNA, complete cds NA coding protein psRNATarget
BT040698.1
ncRNA:24   ACGGUGACCGGGGUGUACAGUAUG   1
  ***===||||=|||||||||||||
targets:683   AAAUGUUGGCUCCACAUGUCAUAC   706

2.0 Zea mays full-length cDNA clone ZM_BFc0119B19 mRNA, complete cds NA coding protein psRNATarget
NM_001147730.1
ncRNA:24   ACGGUGACCGGGGUGUACAGUAUG   1
  ||||||||||=|||||||||||||
targets:652   UGCCACUGGCUCCACAUGUCAUAC   675

1.0 Zea mays Vacuolar protein sorting-associated protein 24 homolog 1 (umc2748), mRNA NA coding protein psRNATarget
NM_001147730.1
ncRNA:24   ACGGUGACCGGGGUGUACAGUAUG   1
  ***===||||=|||||||||||||
targets:683   AAAUGUUGGCUCCACAUGUCAUAC   706

2.0 Zea mays Vacuolar protein sorting-associated protein 24 homolog 1 (umc2748), mRNA NA coding protein psRNATarget
XM_008655872.2
ncRNA:24   ACGGUGACCGGGGUGUACAGUAUG   1
  |||||||||||||||||||||||*
targets:1125   UGCCACUGGCCCCACAUGUCAUAG   1148

1.0 PREDICTED: Zea mays glutathione S-transferase T3-like (LOC103634314), mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.