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BaseInfo

ncRNA ID novel_zma_miR3491
Species Zea mays
Class miRNA
Genome position Chr5:191677981-191678074 [+]
Reference genome RefGen_v4
Source SRR2287031;SRR2287164;SRR4237221
Length 23
Mature sequence(if miRNA) 72 - AGAAGCGCACAGAUGAAGUCGGG - 94
Stem-loop(if miRNA) --     G   G                    G  G   CG     U
  CGGCU CAU UGUGUGCUUCUCUUCUCUUA GU GGU  CUAAG G
  ||||| ||| |||||||||||||||||||| || |||  |||||
  GCUGA GUA ACACGCGAAGAGAAGAGAAU CA CCG  GAUUC A
GG     A   G                    A  G   AU     U
Stem-loop sequence CGGCUGCAUGUGUGUGCUUCUCUUCUCUUAGGUGGGUCGCUAAGUGAUCUUAGUAGCCGACAUAAGAGAAGAGAAGCGCACAGAUGAAGUCGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:23   GGGCUGAAGUAGACACGCGAAGA   1
  ||||=|||=||||||||||||||
targets:3266   CCCGGCUUUAUCUGUGCGCUUCU   3288

2.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:23   GGGCUGAAGUAGACACGCGAAGA   1
  ||||=|||=||||||||||||||
targets:3404   CCCGGCUUUAUCUGUGCGCUUCU   3426

2.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget