Search result

BaseInfo

ncRNA ID novel_zma_miR3486
Species Zea mays
Class miRNA
Genome position Chr4:136151054-136151113 [+]
Reference genome RefGen_v4
Source SRR2287031
Length 24
Mature sequence(if miRNA) 37 - AUGGACAACUGUAGGUGGGCCUAA - 60
Stem-loop(if miRNA) --    G         GGU     GAG   C
  AGGU CACCUGCAG   UGUUU   GUU G
  |||| |||||||||   |||||   ||| U
  UCCG GUGGAUGUC   ACAGG   CAG U
AA    G         --A     -UA   G
Stem-loop sequence AGGUGCACCUGCAGGGUUGUUUGAGGUUCGUUGGACAUGGACAACUGUAGGUGGGCCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ106947.1
ncRNA:24   AAUCCGGGUGGAUGUCAACAGGUA   1
  ||||||||=|||||||||||||*|
targets:166   UUAGGCCCGCCUACAGUUGUCCUU   189

2.5 TSA: Zea mays contig42605, mRNA sequence NA coding protein psRNATarget
BT038945.1
ncRNA:24   AAUCCGGGUGGAUGUCAACAGGUA   1
  *|||||||||||||||||||||*|
targets:624   CUAGGCCCACCUACAGUUGUCCUU   647

1.5 Zea mays full-length cDNA clone ZM_BFb0341N05 mRNA, complete cds NA coding protein psRNATarget