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BaseInfo

ncRNA ID novel_zma_miR3483
Species Zea mays
Class miRNA
Genome position Chr4:7889997-7890088 [+]
Reference genome RefGen_v4
Source SRR2287031
Length 24
Mature sequence(if miRNA) 1 - AGGAUUGGAGGGGAUUGAGGGAGA - 24
Stem-loop(if miRNA) --A           G   -     A         U C       CAA
   GGAUUGGAGGG AUU GAGGG GAUUAAAUC C UUCUAUU   U
   ||||||||||| ||| ||||| ||||||||| | |||||||
   CCUAAUUUCCU UAA CUCCC CUAAUUUAG G AGGAUGA   U
CCA           G   U     -         U A       AUU
Stem-loop sequence AGGAUUGGAGGGGAUUGAGGGAGAUUAAAUCUCCUUCUAUUCAAUUUUAAGUAGGAAGUGAUUUAAUCCCCUCUAAUGUCCUUUAAUCCACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT088155.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||||=|||||||||||||||||||
targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486

0.0 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
EZ098881.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  |=|||||=||||||||||||||||
targets:77   UUUCCCUUAAUCCCCUCCAAUCCU   100

1.0 TSA: Zea mays contig34536, mRNA sequence NA coding protein psRNATarget
JB163452.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||||||||||||||||=||||||*
targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107

2.5 Sequence 1116 from Patent EP2559767 NA coding protein psRNATarget
HI402991.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||||||||||||||||=||||||*
targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107

2.5 Sequence 1116 from Patent EP2074227 NA coding protein psRNATarget
LQ235121.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||||||||||||||||=||||||*
targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107

2.5 Sequence 1116 from Patent EP2985353 NA coding protein psRNATarget
HI403493.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||*|||||||||||||||||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

0.0 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
LQ235623.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||*|||||||||||||||||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

0.0 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
JB163954.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||*|||||||||||||||||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

0.0 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
EZ055746.1
ncRNA:24   AGAG-GGAGUUAGGGGAGGUUAGGA   1
  |=||-||||||||||||||||||||
targets:74   UUUCACCUCAAUCCCCUCCAAUCCU   98

0.0 TSA: Zea mays contig56868, mRNA sequence NA coding protein psRNATarget
AY110351.1
ncRNA:24   AGAG-GGAGUUAGGGGAGGUUAGGA   1
  |=||-||||||||||||||||||||
targets:40   UUUCACCUCAAUCCCCUCCAAUCCU   64

0.0 Zea mays CL33021_1 mRNA sequence NA coding protein psRNATarget
XM_020551688.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||*|||||||||||||||=|||||
targets:2150   UCCCCCUCAAUCCCCUCCGAUCCU   2173

1.5 PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA NA coding protein psRNATarget
HI403290.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||||*||||||||||||||||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

1.0 Sequence 1415 from Patent EP2074227 NA coding protein psRNATarget
JB163751.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||||*||||||||||||||||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

1.0 Sequence 1415 from Patent EP2559767 NA coding protein psRNATarget
LQ235420.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||||*||||||||||||||||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

1.0 Sequence 1415 from Patent EP2985353 NA coding protein psRNATarget
NM_001349063.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUU-AGGA   1
  |=||=|||||||||||||||-||||
targets:1644   UUUCUCUCAAUCCCCUCCAACUCCU   1668

3.0 Zea mays Electron carrier/ iron ion binding protein (cl22526_1), mRNA NA coding protein psRNATarget
BT064254.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUU-AGGA   1
  |=||=|||||||||||||||-||||
targets:1644   UUUCUCUCAAUCCCCUCCAACUCCU   1668

3.0 Zea mays full-length cDNA clone ZM_BFc0153A19 mRNA, complete cds NA coding protein psRNATarget
BT067571.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUU-AGGA   1
  |=||=|||||||||||||||-||||
targets:1631   UUUCUCUCAAUCCCCUCCAACUCCU   1655

3.0 Zea mays full-length cDNA clone ZM_BFc0088A12 mRNA, complete cds NA coding protein psRNATarget
XM_008649902.2
ncRNA:24   AGAGGGAGUUAGGGGAGGUU-AGGA   1
  |=||=|||||||||||||||-||||
targets:1674   UUUCUCUCAAUCCCCUCCAACUCCU   1698

3.0 PREDICTED: Zea mays Electron carrier/ iron ion binding protein (cl22526_1), transcript variant X1, mRNA NA coding protein psRNATarget
HI409663.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||*||||=||||||||=|||||||
targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90

2.5 Sequence 7788 from Patent EP2074227 NA coding protein psRNATarget
LQ241793.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||*||||=||||||||=|||||||
targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90

2.5 Sequence 7788 from Patent EP2985353 NA coding protein psRNATarget
JB170124.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||*||||=||||||||=|||||||
targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90

2.5 Sequence 7788 from Patent EP2559767 NA coding protein psRNATarget
EU961132.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||*||||=||||||||=|||||||
targets:821   UCCCCCUUAAUCCCCUUCAAUCCU   844

2.5 Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds NA coding protein psRNATarget
BT040716.2
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||*||||=||||||||=|||||||
targets:860   UCCCCCUUAAUCCCCUUCAAUCCU   883

2.5 Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds NA coding protein psRNATarget
NM_001147738.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||*||||=||||||||=|||||||
targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888

2.5 Zea mays putative glutathione peroxidase (LOC100273297), mRNA NA coding protein psRNATarget
BT066291.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||*||||=||||||||=|||||||
targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888

2.5 Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds NA coding protein psRNATarget
XM_020549567.1
ncRNA:24   AGA---GGGAGUUAGGGGAGGUUAGGA   1
  |||---||||||||||||||=|||||*
targets:1064   UCUAGCCCCUCAAUCCCCUCUAAUCCC   1090

2.5 PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008649581.2
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||*||||||||||||||=|||||*
targets:1798   UCCCCCUCAAUCCCCUCUAAUCCC   1821

2.5 PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547043.1
ncRNA:24   AGAGGGAGUUAGGGGAGGUUAGGA   1
  ||*|||||||||||||||=||||*
targets:3175   UCCCCCUCAAUCCCCUCCGAUCCC   3198

2.5 PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546477.1
ncRNA:24   AGA----GGGAGUUAGGGGAGGUUAGGA   1
  |=|----||||||||||||||||=|||*
targets:6   UUUAGCCCCCUCAAUCCCCUCCAGUCCC   33

2.5 PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA NA coding protein psRNATarget
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