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BaseInfo

ncRNA ID novel_zma_miR3480
Species Zea mays
Class miRNA
Genome position Chr4:71430066-71430157 [+]
Reference genome RefGen_v4
Source SRR2287031;SRR2287162;SRR2089700
Length 24
Mature sequence(if miRNA) 69 - UAUGAGGAAUGAGGUGGUGAUGAA - 92
Stem-loop(if miRNA) --      G A           -----AAUUUG   GGAUAACUUCAU
  CAUCAU A UUCAUUUCUCA           GUG            U
  |||||| | |||||||||||           |||            C
  GUAGUG U GAGUAAGGAGU           AAU            C
AA      G G           AUCAAUCAACA   CAUAAUUAUACA
Stem-loop sequence CAUCAUGAAUUCAUUUCUCAAAUUUGGUGGGAUAACUUCAUUCCACAUAUUAAUACUAAACAACUAACUAUGAGGAAUGAGGUGGUGAUGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020546133.1
ncRNA:24   AAGUAGUGGUGGAGUAAGGAGUAU   1
  ||||||||||||||||||||||||
targets:629   UUCAUCACCACCUCAUUCCUCAUA   652

0.0 PREDICTED: Zea mays ubiquitin-activating enzyme E1 3 (LOC103634508), transcript variant X2, mRNA NA coding protein psRNATarget
BT068564.1
ncRNA:24   AAGUAGUGGUGGAGUAAGGAGUAU   1
  |*||||||||||||||||||=|||
targets:132   UCCAUCACCACCUCAUUCCUUAUA   155

1.5 Zea mays full-length cDNA clone ZM_BFb0327N20 mRNA, complete cds NA coding protein psRNATarget
EU949478.1
ncRNA:24   AAGUAGUGGUGGAGUAAGGAGUAU   1
  |*||||||||=|||||||||||||
targets:257   UCCAUCACCAUCUCAUUCCUCAUA   280

1.0 Zea mays clone 416401 mRNA sequence NA coding protein psRNATarget
BT063621.1
ncRNA:24   AAGUAGUGGUGGAGUAAGGAGUAU   1
  |*|||||=||||||||||||||||
targets:935   UCCAUCAUCACCUCAUUCCUCAUA   958

1.0 Zea mays full-length cDNA clone ZM_BFc0086K20 mRNA, complete cds NA coding protein psRNATarget
NM_001174998.1
ncRNA:24   AAGUAGUGGUGGAGUAAGGAGUAU   1
  |*|||||=||||||||||||||||
targets:935   UCCAUCAUCACCUCAUUCCUCAUA   958

1.0 Zea mays soluble epoxide hydrolase (pco095801), transcript variant 3, mRNA NA coding protein psRNATarget
EU940886.1
ncRNA:24   AAGUAGUGGUGGAGUAAGGAGUAU   1
  |*||||||||=|||||||||||||
targets:884   UCCAUCACCAUCUCAUUCCUCAUA   907

1.0 Zea mays clone 1166248 mRNA sequence NA coding protein psRNATarget
BT024051.1
ncRNA:24   AAGUAGUGGUGGAGUAAGGAGUAU   1
  |*|||||||||=||||||||||||
targets:2028   UCCAUCACCACUUCAUUCCUCAUA   2051

1.5 Zea mays clone EL01N0437F11 mRNA sequence NA coding protein psRNATarget
BT068011.1
ncRNA:24   AAG-UAGUGGUGGAGUAAGGAGUAU   1
  *||-||||||||||=||||||||||
targets:1209   AUCUAUCACCACCUUAUUCCUCAUA   1233

1.5 Zea mays full-length cDNA clone ZM_BFb0019K20 mRNA, complete cds NA coding protein psRNATarget
XM_020542382.1
ncRNA:24   AAGUAGUGGUGGAGUAAGGAGUAU   1
  |*|||||=||||||||||||=|||
targets:1198   UCCAUCAUCACCUCAUUCCUUAUA   1221

2.5 PREDICTED: Zea mays deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog (LOC103634732), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549921.1
ncRNA:24   AAG-UAGUGGUGGAGUAAGGAGUAU   1
  *||-||||||||||=||||||||||
targets:2250   AUCUAUCACCACCUUAUUCCUCAUA   2274

1.5 PREDICTED: Zea mays putative histone-lysine N-methyltransferase family protein (LOC100383674), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001319048.1
ncRNA:24   AAG-UAGUGGUGGAGUAAGGAGUAU   1
  *||-||||||||||=||||||||||
targets:2312   AUCUAUCACCACCUUAUUCCUCAUA   2336

1.5 Zea mays putative histone-lysine N-methyltransferase family protein (LOC100383674), mRNA NA coding protein psRNATarget
XM_020547325.1
ncRNA:24   AAG-UAGUGGUGGAGUAAGGAGUAU   1
  *||-||||||||||=||||||||||
targets:1110   AUCUAUCACCACCUUAUUCCUCAUA   1134

1.5 PREDICTED: Zea mays transcription factor MYB31 (myb31), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547324.1
ncRNA:24   AAG-UAGUGGUGGAGUAAGGAGUAU   1
  *||-||||||||||=||||||||||
targets:1111   AUCUAUCACCACCUUAUUCCUCAUA   1135

1.5 PREDICTED: Zea mays transcription factor MYB31 (myb31), transcript variant X1, mRNA NA coding protein psRNATarget
BT060616.1
ncRNA:24   AAGUAGUGGUGGAGUAAGGAGUAU   1
  |*||||||||||||||||=||||*
targets:1150   UCCAUCACCACCUCAUUCUUCAUC   1173

2.5 Zea mays full-length cDNA clone ZM_BFb0024O19 mRNA, complete cds NA coding protein psRNATarget
NM_001165701.1
ncRNA:24   AAGUAGUGGUGGAGUAAGGAGUAU   1
  |*||||||||||||||||=||||*
targets:1150   UCCAUCACCACCUCAUUCUUCAUC   1173

2.5 Zea mays putative RING zinc finger domain superfamily protein (LOC100304258), mRNA NA coding protein psRNATarget
HI406853.1
ncRNA:21   UAGUGGUGGAGUAAGGAGUAU   1
  |||||||=|||||||||||||
targets:1   AUCACCAUCUCAUUCCUCAUA   21

1.0 Sequence 4978 from Patent EP2074227 NA coding protein psRNATarget
JB167314.1
ncRNA:21   UAGUGGUGGAGUAAGGAGUAU   1
  |||||||=|||||||||||||
targets:1   AUCACCAUCUCAUUCCUCAUA   21

1.0 Sequence 4978 from Patent EP2559767 NA coding protein psRNATarget
LQ238983.1
ncRNA:21   UAGUGGUGGAGUAAGGAGUAU   1
  |||||||=|||||||||||||
targets:1   AUCACCAUCUCAUUCCUCAUA   21

1.0 Sequence 4978 from Patent EP2985353 NA coding protein psRNATarget
EU944542.1
ncRNA:24   AAGUAGUGGUGGAGUAAGGAGUAU   1
  |*|=||||=|||||=|||||||||
targets:1142   UGCGUCACUACCUCGUUCCUCAUA   1165

2.5 Zea mays clone 222066 mRNA sequence NA coding protein psRNATarget
XM_008649207.2
ncRNA:24   AAG-UAGUGGUGGAGUAAGGAGUAU   1
  *||-||||=|||||||||=||||||
targets:1491   AUCUAUCAUCACCUCAUUUCUCAUA   1515

2.5 PREDICTED: Zea mays F-box protein (LOC100194037), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008649205.2
ncRNA:24   AAG-UAGUGGUGGAGUAAGGAGUAU   1
  *||-||||=|||||||||=||||||
targets:1582   AUCUAUCAUCACCUCAUUUCUCAUA   1606

2.5 PREDICTED: Zea mays F-box protein (LOC100194037), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001139098.1
ncRNA:24   AAG-UAGUGGUGGAGUAAGGAGUAU   1
  *||-||||=|||||||||=||||||
targets:1740   AUCUAUCAUCACCUCAUUUCUCAUA   1764

2.5 Zea mays F-box protein (LOC100194037), mRNA NA coding protein psRNATarget
BT036460.1
ncRNA:24   AAG-UAGUGGUGGAGUAAGGAGUAU   1
  *||-||||=|||||||||=||||||
targets:1740   AUCUAUCAUCACCUCAUUUCUCAUA   1764

2.5 Zea mays full-length cDNA clone ZM_BFb0117E09 mRNA, complete cds NA coding protein psRNATarget
XM_008649206.2
ncRNA:24   AAG-UAGUGGUGGAGUAAGGAGUAU   1
  *||-||||=|||||||||=||||||
targets:1865   AUCUAUCAUCACCUCAUUUCUCAUA   1889

2.5 PREDICTED: Zea mays F-box protein (LOC100194037), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020540676.1
ncRNA:24   AAGUAGUGGUGGAGUAAGGAGUAU   1
  |*|||=*|||||||||||||||||
targets:1924   UCCAUUUCCACCUCAUUCCUCAUA   1947

2.0 PREDICTED: Zea mays HAD-superfamily hydrolase subfamily IG 5'-nucleotidase (cl20716_1(184)), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020545387.1
ncRNA:24   AAGUAGUGGUGGAGUAAGGAGUAU   1
  **|=*||=||||||=|||||||||
targets:406   GCCGCCAUCACCUCGUUCCUCAUA   429

2.5 PREDICTED: Zea mays uncharacterized LOC103642518 (LOC103642518), mRNA NA coding protein psRNATarget
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