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BaseInfo

ncRNA ID osa-miR395w
Species Oryza sativa
Class miRNA
Genome position Chr9:6606291-6606359 [-]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 1 - GUGAAGUGUUUGGGGGAUUCUC - 22
Stem-loop(if miRNA) --         UUAAU          ----   A  AU
  GAGUUCUCU     CAUUUCACAU    GGC CU  U
  |||||||||     ||||||||||    ||| ||
  CUUAGGGGG     GUGAAGUGUG    CCG GA  U
CU         --UUU          UCAU   -  AU
Stem-loop sequence GAGUUCUCUUUAAUCAUUUCACAUGGCACUAUUUUAAGGCCUACUGUGUGAAGUGUUUGGGGGAUUCUC

Reference

1 PMID:16117853
"Molecular evolution of the rice miR395 gene family";
Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L;
Cell Res. 15:631-638(2005).
2 PMID:20131478
"Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses";
Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK;
Mol Genet Genomics. 282:463-474(2009).