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BaseInfo

ncRNA ID novel_zma_miR3479
Species Zea mays
Class miRNA
Genome position Chr4:69405897-69405987 [+]
Reference genome RefGen_v4
Source SRR2287031
Length 20
Mature sequence(if miRNA) 72 - CAAUUUAGGGACUAAAAUAA - 91
Stem-loop(if miRNA) --                 AC          A       CUCUAU
  AUUUUAGUCUCUAAAUU  CAAAUACGGA ACUAAAA      U
  |||||||||||||||||  |||||||||| |||||||      U
  UAAAAUCAGGGAUUUAA  GUUUAUGCCU UGAUUUU      U
AA                 CA          G       AUCUUA
Stem-loop sequence AUUUUAGUCUCUAAAUUACCAAAUACGGAAACUAAAACUCUAUUUUAUUCUAUUUUAGUGUCCGUAUUUGACAAUUUAGGGACUAAAAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020546127.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  |||||||||||=||||||||
targets:1437   UUAUUUUAGUCUCUAAAUUG   1456

1.5 PREDICTED: Zea mays myb-related protein 330 (LOC103642827), mRNA NA coding protein psRNATarget
NM_001111805.2
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  ||||||||||=|||||||||
targets:1525   UUAUUUUAGUUCCUAAAUUG   1544

1.5 Zea mays uncharacterized LOC542191 (TIDP2941), mRNA NA coding protein psRNATarget
AY104678.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  ||||||||||=|||||||||
targets:1514   UUAUUUUAGUUCCUAAAUUG   1533

1.5 Zea mays PCO081661 mRNA sequence NA coding protein psRNATarget
LQ239062.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *|||||||||||||||||||
targets:25   CUAUUUUAGUCCCUAAAUUG   44

0.0 Sequence 5057 from Patent EP2985353 NA coding protein psRNATarget
HI406932.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *|||||||||||||||||||
targets:25   CUAUUUUAGUCCCUAAAUUG   44

0.0 Sequence 5057 from Patent EP2074227 NA coding protein psRNATarget
JB167393.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *|||||||||||||||||||
targets:25   CUAUUUUAGUCCCUAAAUUG   44

0.0 Sequence 5057 from Patent EP2559767 NA coding protein psRNATarget
XM_020545045.1
ncRNA:20   AA--UAAAAUCAGGGAUUUAAC   1
  ||--||||||||||||||||||
targets:2166   UUCCAUUUUAGUCCCUAAAUUG   2187

2.5 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
AY111308.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *||||||||||=||||||||
targets:1067   CUAUUUUAGUCUCUAAAUUG   1086

1.5 Zea mays CL5730_1 mRNA sequence NA coding protein psRNATarget
BT085047.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *||||||||||||||||||*
targets:1237   CUAUUUUAGUCCCUAAAUUA   1256

1.0 Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds NA coding protein psRNATarget
EU943837.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  **||||||||||||||||||
targets:427   CCAUUUUAGUCCCUAAAUUG   446

1.0 Zea mays clone 1689635 mRNA sequence NA coding protein psRNATarget
XM_020549695.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *||||||||||=|||||||*
targets:2633   CUAUUUUAGUCUCUAAAUUA   2652

2.5 PREDICTED: Zea mays Exonuclease domain-containing protein 1 (umc1347), transcript variant X9, mRNA NA coding protein psRNATarget
BT063859.2
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *||||||||||=|||||||*
targets:1080   CUAUUUUAGUCUCUAAAUUA   1099

2.5 Zea mays full-length cDNA clone ZM_BFc0113G11 mRNA, complete cds NA coding protein psRNATarget
NM_001175060.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *||||||||||=|||||||*
targets:1080   CUAUUUUAGUCUCUAAAUUA   1099

2.5 Zea mays uncharacterized LOC100382311 (LOC100382311), mRNA NA coding protein psRNATarget
LQ235369.1
ncRNA:20   AA-UAAAAUCAGGGAUUUAAC   1
  ||-|||||||||||||||||*
targets:11   UUCAUUUUAGUCCCUAAAUUA   31

3.0 Sequence 1364 from Patent EP2985353 NA coding protein psRNATarget
JB163700.1
ncRNA:20   AA-UAAAAUCAGGGAUUUAAC   1
  ||-|||||||||||||||||*
targets:11   UUCAUUUUAGUCCCUAAAUUA   31

3.0 Sequence 1364 from Patent EP2559767 NA coding protein psRNATarget
HI403239.1
ncRNA:20   AA-UAAAAUCAGGGAUUUAAC   1
  ||-|||||||||||||||||*
targets:11   UUCAUUUUAGUCCCUAAAUUA   31

3.0 Sequence 1364 from Patent EP2074227 NA coding protein psRNATarget
EU944198.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *|||||||*|||||||||||
targets:470   CUAUUUUAAUCCCUAAAUUG   489

1.5 Zea mays clone 207719 mRNA sequence NA coding protein psRNATarget
JB163791.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *|=||||||||||||||||*
targets:12   CUGUUUUAGUCCCUAAAUUA   31

2.0 Sequence 1455 from Patent EP2559767 NA coding protein psRNATarget
HI403330.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *|=||||||||||||||||*
targets:12   CUGUUUUAGUCCCUAAAUUA   31

2.0 Sequence 1455 from Patent EP2074227 NA coding protein psRNATarget
LQ235460.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *|=||||||||||||||||*
targets:12   CUGUUUUAGUCCCUAAAUUA   31

2.0 Sequence 1455 from Patent EP2985353 NA coding protein psRNATarget
HI403393.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  **|||||||||||||||||*
targets:12   CCAUUUUAGUCCCUAAAUUA   31

2.0 Sequence 1518 from Patent EP2074227 NA coding protein psRNATarget
JB163854.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  **|||||||||||||||||*
targets:12   CCAUUUUAGUCCCUAAAUUA   31

2.0 Sequence 1518 from Patent EP2559767 NA coding protein psRNATarget
LQ235523.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  **|||||||||||||||||*
targets:12   CCAUUUUAGUCCCUAAAUUA   31

2.0 Sequence 1518 from Patent EP2985353 NA coding protein psRNATarget
EU947016.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *||||||||||||||*|||*
targets:322   CUAUUUUAGUCCCUACAUUA   341

2.5 Zea mays clone 326144 mRNA sequence NA coding protein psRNATarget
NM_001157668.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *||||||||||||||*|||*
targets:665   CUAUUUUAGUCCCUACAUUA   684

2.5 Zea mays BCL-2 binding anthanogene-1 (pco067049), mRNA NA coding protein psRNATarget
EU969631.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *||||||||||||||*|||*
targets:665   CUAUUUUAGUCCCUACAUUA   684

2.5 Zea mays clone 333378 BCL-2 binding anthanogene-1 mRNA, complete cds NA coding protein psRNATarget
AY105187.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *||||||||||||||*|||*
targets:323   CUAUUUUAGUCCCUACAUUA   342

2.5 Zea mays PCO067049 mRNA sequence NA coding protein psRNATarget
AY106862.1
ncRNA:20   AAUAAAAUCAGGGAUUUAAC   1
  *|||||*||||||||||||*
targets:381   CUAUUUAAGUCCCUAAAUUA   400

2.0 Zea mays PCO139775 mRNA sequence NA coding protein psRNATarget