Search result

BaseInfo

ncRNA ID	novel_zma_miR3474
Species	Zea mays
Class	miRNA
Genome position	Chr4:41273639-41273692 [+]
Reference genome	RefGen_v4
Source	SRR2287031;SRR2287159;SRR2089698;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - CGGCCCUGAGGCUGGACGGUCCGC - 24
Stem-loop(if miRNA)	--      UG    -     G     C   CGGCCC  AGGC UGGAC GUCCG G   ||||||  |||| ||||| ||||| G   GCCGGG  UCCG GCCUG CAGGC U AG      UG    C     A     C
Stem-loop sequence	CGGCCCUGAGGCUGGACGGUCCGCGGUCCGGACAGUCCGCGCCUGUGGGCCGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU947355.1	ncRNA:24   CGCCUGGCAGGUCGGAGUCCCGGC   1   |||||||||||=|||||||||||| targets:88   GCGGACCGUCCGGCCUCAGGGCCG   111 Target Full Sequence	1.5	Zea mays clone 340715 mRNA sequence	NA	coding protein	psRNATarget
BT034345.1	ncRNA:24   CGCCUGGCAGGUCGGAGUCCCGGC   1   |||||||||||=|||||||||||| targets:753   GCGGACCGUCCGGCCUCAGGGCCG   776 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
EU940813.1	ncRNA:24   CGCCUGGCAGGUCGGAGUCCCGGC   1   |||||||||||=|||||||||||| targets:78   GCGGACCGUCCGGCCUCAGGGCCG   101 Target Full Sequence	1.5	Zea mays clone 1145688 mRNA sequence	NA	coding protein	psRNATarget
XM_020550306.1	ncRNA:24   CGCCUGGCAGGUCGGAGUCCCGGC   1   |||||||||||=|||||||||||| targets:214   GCGGACCGUCCGGCCUCAGGGCCG   237 Target Full Sequence	1.5	PREDICTED: Zea mays enolase 1-like (LOC103650544), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008676122.2	ncRNA:24   CGCCUGGCAGGUCGGAGUCCCGGC   1   |||||||||||=|||||||||||| targets:214   GCGGACCGUCCGGCCUCAGGGCCG   237 Target Full Sequence	1.5	PREDICTED: Zea mays enolase 1-like (LOC103650544), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676123.2	ncRNA:24   CGCCUGGCAGGUCGGAGUCCCGGC   1   |||||||||||=|||||||||||| targets:214   GCGGACCGUCCGGCCUCAGGGCCG   237 Target Full Sequence	1.5	PREDICTED: Zea mays enolase 1-like (LOC103650544), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008676121.2	ncRNA:24   CGCCUGGCAGGUCGGAGUCCCGGC   1   |||||||||||=|||||||||||| targets:214   GCGGACCGUCCGGCCUCAGGGCCG   237 Target Full Sequence	1.5	PREDICTED: Zea mays enolase 1-like (LOC103650544), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ061701.1	ncRNA:24   CGCCUGGCAGGUCGGAGUCCCGGC   1   *||||||||||=|||||||||||| targets:202   ACGGACCGUCCGGCCUCAGGGCCG   225 Target Full Sequence	1.5	TSA: Zea mays contig62823, mRNA sequence	NA	coding protein	psRNATarget