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BaseInfo

ncRNA ID	osa-miR1440a
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:5980506-5980694 [-]
Reference genome	MSU7
Source	miRBase
Length	20
Mature sequence(if miRNA)	161 - UGCUCAAAUACCACUCUCCU - 180
Stem-loop(if miRNA)	A                          C    C          C                      ---    -----   C     CCC AAAUGCCA UGCUCAAAUACCACUCUCCUAAAUUU CAUU CCAAAUACCA CCGGGCCCACAUGUCAGCCUCA   UCCA     GCA AGGGU   A |||||||| |||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||   ||||     ||| ||||| UUUACGGU ACGAGUUUAUGGUGAGAGGGUUUAAA GUAA GGUUUAUGGU GGCCCGGGUGUACAGUCGGAGU   AGGU     UGU UUUCA   C         C                          A    U          A                      GAA    AAGUU   -     CUA
Stem-loop sequence	AAAUGCCAAUGCUCAAAUACCACUCUCCUAAAUUUCCAUUCCCAAAUACCACCCGGGCCCACAUGUCAGCCUCAUCCAGCACAGGGUCCCACAUCACUUUUGUUUGAAUGGAAAGUGAGGCUGACAUGUGGGCCCGGAUGGUAUUUGGUAAUGAAAAUUUGGGAGAGUGGUAUUUGAGCACUGGCAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015789885.1	ncRNA:20   UCCUCUCACCAUAAACUCGU   1   |||||||||||||||||||| targets:903   AGGAGAGUGGUAUUUGAGCA   922 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group transmembrane protein 97 (LOC4343156), mRNA	transmembrane protein 97(LOC4343156)	coding protein	psRNATarget
AK062101.1	ncRNA:20   UCCUCUCACCAUAAACUCGU   1   *||||=||||||*||||||| targets:66   CGGAGGGUGGUACUUGAGCA   85 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-045-A08, full insert sequence	NA	coding protein	psRNATarget
AK098888.1	ncRNA:20   UCCUCUCACCAUAAACUCGU   1   *||||=||||||*||||||| targets:2678   CGGAGGGUGGUACUUGAGCA   2697 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013001L03, full insert sequence	NA	coding protein	psRNATarget
AK067278.1	ncRNA:20   UCCUCUCACCAUAAACUCGU   1   *||||=||||||*||||||| targets:2682   CGGAGGGUGGUACUUGAGCA   2701 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013098H22, full insert sequence	NA	coding protein	psRNATarget
XM_015789298.1	ncRNA:20   UCCUCUCACCAUAAACUCGU   1   *||||=||||||*||||||| targets:2735   CGGAGGGUGGUACUUGAGCA   2754 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107275951 (LOC107275951), mRNA	uncharacterized LOC107275951(LOC107275951)	coding protein	psRNATarget
AB072978.1	ncRNA:20   UCCUCUCACCAUAAACUCGU   1   *||||=||||||*||||||| targets:2735   CGGAGGGUGGUACUUGAGCA   2754 Target Full Sequence	2.5	Oryza sativa OsBLE2 mRNA for BLE2 protein, complete cds	NA	coding protein	psRNATarget
XM_015792337.1	ncRNA:20   UCCUCUCACCAUAAACUCGU   1   *||||=||||||*||||||| targets:2828   CGGAGGGUGGUACUUGAGCA   2847 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272496 (LOC9272496), transcript variant X1, mRNA	uncharacterized LOC9272496(LOC9272496)	coding protein	psRNATarget
XM_015791412.1	ncRNA:20   UCCUCUCACCAUAAACUCGU   1   *||||=||||||*||||||| targets:2912   CGGAGGGUGGUACUUGAGCA   2931 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344126 (LOC4344126), mRNA	uncharacterized LOC4344126(LOC4344126)	coding protein	psRNATarget
XM_015792338.1	ncRNA:20   UCCUCUCACCAUAAACUCGU   1   *||||=||||||*||||||| targets:3321   CGGAGGGUGGUACUUGAGCA   3340 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272496 (LOC9272496), transcript variant X2, mRNA	uncharacterized LOC9272496(LOC9272496)	coding protein	psRNATarget
AK242353.1	ncRNA:20   UCCUCUCACCAUAAACUCGU   1   **||||||||*||||||||| targets:1190   UUGAGAGUGGCAUUUGAGCA   1209 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080016G21, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:18312648 "Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008).