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BaseInfo

ncRNA ID	novel_zma_miR3456
Species	Zea mays
Class	miRNA
Genome position	Chr2:229237065-229237150 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	63 - AACCCGGAGGGGAUUGGAGGGGCU - 86
Stem-loop(if miRNA)	--    C                        C          U   AACC GGAGGGGAUUGGAGGGGCUAAAAU CCCUCUUUAU C   |||| |||||||||||||||||||||||| ||||||||||   UUGG CCUCCUCUAGCUUCCCCGAUUUUA GGGAGGAAUA G UU    A                        A          A
Stem-loop sequence	AACCCGGAGGGGAUUGGAGGGGCUAAAAUCCCCUCUUUAUUCGAAUAAGGAGGGAAUUUUAGCCCCUUCGAUCUCCUCCAGGUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235519.1	ncRNA:24   UCGGGGAGGUUAGGGGAGGCCCAA   1   ||||||||||||=||||||||||| targets:75   AGCCCCUCCAAUUCCCUCCGGGUU   98 Target Full Sequence	1.5	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
HI403389.1	ncRNA:24   UCGGGGAGGUUAGGGGAGGCCCAA   1   ||||||||||||=||||||||||| targets:75   AGCCCCUCCAAUUCCCUCCGGGUU   98 Target Full Sequence	1.5	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
JB163850.1	ncRNA:24   UCGGGGAGGUUAGGGGAGGCCCAA   1   ||||||||||||=||||||||||| targets:75   AGCCCCUCCAAUUCCCUCCGGGUU   98 Target Full Sequence	1.5	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
BT065170.1	ncRNA:24   UCGGGGAGGUUAGGGGAGGCCCAA   1   |*|||||||||||||||||||||| targets:685   AUCCCCUCCAAUCCCCUCCGGGUU   708 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   UCGGGGAGGUUAGGGGAGGCCCAA   1   |*|||||||||||||||||||||| targets:1565   AUCCCCUCCAAUCCCCUCCGGGUU   1588 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   UCGGGGAGGUUAGGGGAGGCCCAA   1   |*|||||||||||||||||||||| targets:1585   AUCCCCUCCAAUCCCCUCCGGGUU   1608 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   UCGGGGAGGUUAGGGGAGGCCCAA   1   |*|||||||||||||||||||||| targets:1609   AUCCCCUCCAAUCCCCUCCGGGUU   1632 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   UCGGGGAGGUUAGGGGAGGCCCAA   1   |*|||||||||||||||||||||| targets:1642   AUCCCCUCCAAUCCCCUCCGGGUU   1665 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   UCGGGGAGGUUAGGGGAGGCCCAA   1   |||||||=|||||||||||||*|| targets:1114   AGCCCCUUCAAUCCCCUCCGGUUU   1137 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
BT017522.1	ncRNA:24   UC--GG--GGAGGUUAGGGGAGGCCCAA   1   ||--||--|||=||||||*||||||||| targets:354   AGAACCAACCUUCAAUCCACUCCGGGUU   381 Target Full Sequence	2.5	Zea mays clone EL01N0421C01.c mRNA sequence	NA	coding protein	psRNATarget