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BaseInfo

ncRNA ID	novel_zma_miR3452
Species	Zea mays
Class	miRNA
Genome position	Chr9:105260695-105260841 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	21
Mature sequence(if miRNA)	127 - UAACCGAACAAGCCCUGAAGG - 147
Stem-loop(if miRNA)	-  -G                -   C    A  CA       GA          AAAAAUUGUGAAGA   UUGAGCUGUU  CU  AGGGCUUGUUCGGUUA UUC CAAU CA  UGGAUUG  UGGGAUUGGA              AGU          U  ||  |||||||||||||||| ||| |||| ||  |||||||  ||||||||||              |||  GA  UCCCGAACAAGCCAAU GAG GUUA GU  ACCUAAC  GCCCUAACCU              ACC          G G  AG                C   A    G  AC       UC          --------------   CAAACUUAGG
Stem-loop sequence	CUGAGGGCUUGUUCGGUUAUUCCCAAUACACAUGGAUUGGAUGGGAUUGGAAAAAAUUGUGAAGAAGUUUGAGCUGUUUGGGAUUCAAACCCAUCCAAUCCCGCUCAAUCCACAUGGAUUGAGAGCUAACCGAACAAGCCCUGAAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008680349.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||||=|||||||||||||||| targets:1873   CCUUUAGGGCUUGUUCGGUUA   1893 Target Full Sequence	1.0	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||||=|||||||||||||||| targets:2707   CCUUUAGGGCUUGUUCGGUUA   2727 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||||=|||||||||||||||| targets:2811   CCUUUAGGGCUUGUUCGGUUA   2831 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   |=||=|||||||||||||||| targets:438   CUUUUAGGGCUUGUUCGGUUA   458 Target Full Sequence	1.0	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   |=||=|||||||||||||||| targets:438   CUUUUAGGGCUUGUUCGGUUA   458 Target Full Sequence	1.0	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
BT062563.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   |=||=|||||||||||||||| targets:1195   CUUUUAGGGCUUGUUCGGUUA   1215 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174684.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   |=||=|||||||||||||||| targets:1195   CUUUUAGGGCUUGUUCGGUUA   1215 Target Full Sequence	1.0	Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA	NA	coding protein	psRNATarget
XM_008645434.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   |=||=|||||||||||||||| targets:2438   CUUUUAGGGCUUGUUCGGUUA   2458 Target Full Sequence	1.0	PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660174.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||||=||||||||||=||||| targets:3499   CCUUUAGGGCUUGUUUGGUUA   3519 Target Full Sequence	2.5	PREDICTED: Zea mays Protein CHAPERONE-LIKE PROTEIN OF POR1 chloroplastic (LOC100276880), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001175832.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||||*|||||||||||||||| targets:1603   CCUUGAGGGCUUGUUCGGUUA   1623 Target Full Sequence	1.0	Zea mays putative cytochrome P450 superfamily protein (LOC100383167), mRNA	NA	coding protein	psRNATarget
EU963392.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||||*|||||||||||||||| targets:1603   CCUUGAGGGCUUGUUCGGUUA   1623 Target Full Sequence	1.0	Zea mays clone 261790 cytochrome P450 CYP71K14 mRNA, complete cds	NA	coding protein	psRNATarget
BT018903.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||||*|||||||||||||||| targets:1936   CCUUAAGGGCUUGUUCGGUUA   1956 Target Full Sequence	1.0	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
BT041883.1	ncRNA:21   GGAA-GUCCCGAACAAGCCAAU   1   ||||-=|||||||||||||||| targets:778   CCUUGUAGGGCUUGUUCGGUUA   799 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0073E14 mRNA, complete cds	NA	coding protein	psRNATarget
BT037847.1	ncRNA:21   GG-AAGUCCCGAACAAGCCAAU   1   ||-||=|||||||||||||||| targets:1198   CCAUUUAGGGCUUGUUCGGUUA   1219 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0199C24 mRNA, complete cds	NA	coding protein	psRNATarget
BT062257.1	ncRNA:21   GGAA-GUCCCGAACAAGCCAAU   1   ||||-=|||||||||||||||| targets:1077   CCUUGUAGGGCUUGUUCGGUUA   1098 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0234J14 mRNA, complete cds	NA	coding protein	psRNATarget
EU975659.1	ncRNA:21   GGAA-GUCCCGAACAAGCCAAU   1   ||||-=|||||||||||||||| targets:2106   CCUUGUAGGGCUUGUUCGGUUA   2127 Target Full Sequence	3.0	Zea mays clone 495563 ankyrin protein kinase-like mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158998.2	ncRNA:21   GGAA-GUCCCGAACAAGCCAAU   1   ||||-=|||||||||||||||| targets:2107   CCUUGUAGGGCUUGUUCGGUUA   2128 Target Full Sequence	3.0	Zea mays Ankyrin protein kinase-like (LOC100279910), mRNA	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:21   GG-AAGUCCCGAACAAGCCAAU   1   ||-||=|||||||||||||||| targets:987   CCAUUUAGGGCUUGUUCGGUUA   1008 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:21   GG-AAGUCCCGAACAAGCCAAU   1   ||-||=|||||||||||||||| targets:1105   CCAUUUAGGGCUUGUUCGGUUA   1126 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:21   GG-AAGUCCCGAACAAGCCAAU   1   ||-||=|||||||||||||||| targets:1105   CCAUUUAGGGCUUGUUCGGUUA   1126 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||||==||||||||||||||* targets:348   CCUUUGGGGCUUGUUCGGUUC   368 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
BT065242.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||*|=|||||||||||||||| targets:62   CCGUUAGGGCUUGUUCGGUUA   82 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0057K09 mRNA, complete cds	NA	coding protein	psRNATarget
BT068797.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   =|||*|||||||||||||||| targets:1035   UCUUAAGGGCUUGUUCGGUUA   1055 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   =|||*|||||||||||||||| targets:1035   UCUUAAGGGCUUGUUCGGUUA   1055 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   =|||*|||||||||||||||| targets:1526   UCUUAAGGGCUUGUUCGGUUA   1546 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035012.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||||=|||||||*|||||||| targets:1512   CCUUUAGGGCUUAUUCGGUUA   1532 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||||=|||||||*|||||||| targets:1512   CCUUUAGGGCUUAUUCGGUUA   1532 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
EU973341.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||||=||||||||||||*||| targets:1720   CCUUUAGGGCUUGUUCGUUUA   1740 Target Full Sequence	2.5	Zea mays clone 397038 catalytic/ protein phosphatase type 2C mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158559.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||||=||||||||||||*||| targets:1720   CCUUUAGGGCUUGUUCGUUUA   1740 Target Full Sequence	2.5	Zea mays uncharacterized LOC100285668 (IDP752), mRNA	NA	coding protein	psRNATarget
EZ097020.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   =*||=|||||||||||||||| targets:31   UGUUUAGGGCUUGUUCGGUUA   51 Target Full Sequence	1.0	TSA: Zea mays contig32675, mRNA sequence	NA	coding protein	psRNATarget
NM_001350737.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||*|=|||||||||||||||| targets:3958   CCAUUAGGGCUUGUUCGGUUA   3978 Target Full Sequence	2.0	Zea mays phospholipase D family protein (LOC100272416), mRNA	NA	coding protein	psRNATarget
EU949641.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   **||=|||||||||||||||| targets:361   GAUUUAGGGCUUGUUCGGUUA   381 Target Full Sequence	1.0	Zea mays clone 438540 mRNA sequence	NA	coding protein	psRNATarget
EU951312.1	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   =||-|=|||||||||||||||| targets:292   UCUGUUAGGGCUUGUUCGGUUA   313 Target Full Sequence	3.0	Zea mays clone 695515 mRNA sequence	NA	coding protein	psRNATarget
EU951101.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   **||=|||||||||||||||| targets:618   GAUUUAGGGCUUGUUCGGUUA   638 Target Full Sequence	1.0	Zea mays clone 687881 mRNA sequence	NA	coding protein	psRNATarget
XM_020553062.1	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   =||-|=|||||||||||||||| targets:802   UCUAUUAGGGCUUGUUCGGUUA   823 Target Full Sequence	3.0	PREDICTED: Zea mays CASP-like protein 12 (LOC100193285), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001138428.2	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   =||-|=|||||||||||||||| targets:853   UCUAUUAGGGCUUGUUCGGUUA   874 Target Full Sequence	3.0	Zea mays CASP-like protein 12 (LOC100193285), mRNA	NA	coding protein	psRNATarget
BT036499.1	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   =||-|=|||||||||||||||| targets:947   UCUAUUAGGGCUUGUUCGGUUA   968 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0119B07 mRNA, complete cds	NA	coding protein	psRNATarget
AY104043.1	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   =||-|=|||||||||||||||| targets:832   UCUGUUAGGGCUUGUUCGGUUA   853 Target Full Sequence	3.0	Zea mays PCO145885 mRNA sequence	NA	coding protein	psRNATarget
BT068594.1	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   =||-|=|||||||||||||||| targets:829   UCUGUUAGGGCUUGUUCGGUUA   850 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds	NA	coding protein	psRNATarget
EU972032.1	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   =||-|=|||||||||||||||| targets:859   UCUGUUAGGGCUUGUUCGGUUA   880 Target Full Sequence	3.0	Zea mays clone 373636 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151506.1	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   =||-|=|||||||||||||||| targets:859   UCUGUUAGGGCUUGUUCGGUUA   880 Target Full Sequence	3.0	Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA	NA	coding protein	psRNATarget
EU974225.1	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   =||-|=|||||||||||||||| targets:1082   UCUAUUAGGGCUUGUUCGGUUA   1103 Target Full Sequence	3.0	Zea mays clone 443257 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT018592.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   =*||=|||||||||||||||| targets:1001   UGUUUAGGGCUUGUUCGGUUA   1021 Target Full Sequence	1.0	Zea mays clone EL01N0447E06.d mRNA sequence	NA	coding protein	psRNATarget
BT068463.1	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   =||-|=|||||||||||||||| targets:1131   UCUGUUAGGGCUUGUUCGGUUA   1152 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT035508.1	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   =||-|=|||||||||||||||| targets:1272   UCUAUUAGGGCUUGUUCGGUUA   1293 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0066P20 mRNA, complete cds	NA	coding protein	psRNATarget
EU956028.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   =*||=|||||||||||||||| targets:1446   UAUUUAGGGCUUGUUCGGUUA   1466 Target Full Sequence	1.0	Zea mays clone 1555850 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062929.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   =*||=|||||||||||||||| targets:1535   UAUUUAGGGCUUGUUCGGUUA   1555 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0008K15 mRNA, complete cds	NA	coding protein	psRNATarget
EU964623.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   **||=|||||||||||||||| targets:1419   GGUUUAGGGCUUGUUCGGUUA   1439 Target Full Sequence	1.0	Zea mays clone 280415 sorting nexin 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147345.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   =*||=|||||||||||||||| targets:1636   UAUUUAGGGCUUGUUCGGUUA   1656 Target Full Sequence	1.0	Zea mays uncharacterized LOC100272892 (LOC100272892), mRNA	NA	coding protein	psRNATarget
BT039694.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   =*||=|||||||||||||||| targets:1636   UAUUUAGGGCUUGUUCGGUUA   1656 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0039F21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658770.2	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   =||-|=|||||||||||||||| targets:2753   UCUGUUAGGGCUUGUUCGGUUA   2774 Target Full Sequence	3.0	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658769.2	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   =||-|=|||||||||||||||| targets:2762   UCUGUUAGGGCUUGUUCGGUUA   2783 Target Full Sequence	3.0	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551710.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   **||=|||||||||||||||| targets:3215   GAUUUAGGGCUUGUUCGGUUA   3235 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100384203), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020551708.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   **||=|||||||||||||||| targets:4850   GAUUUAGGGCUUGUUCGGUUA   4870 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100384203), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008651215.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *|||*|||||||||||||||| targets:361   ACUUGAGGGCUUGUUCGGUUA   381 Target Full Sequence	1.0	PREDICTED: Zea mays putative domain of unknown function (DUF641) containing family protein (LOC103630129), mRNA	NA	coding protein	psRNATarget
AY104367.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ***|||||||||||||||||| targets:606   AACUCAGGGCUUGUUCGGUUA   626 Target Full Sequence	1.0	Zea mays PCO134486 mRNA sequence	NA	coding protein	psRNATarget
EU946469.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ***|||||||||||||||||| targets:682   AACUCAGGGCUUGUUCGGUUA   702 Target Full Sequence	1.0	Zea mays clone 313172 mRNA sequence	NA	coding protein	psRNATarget
NM_001291617.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ***|||||||||||||||||| targets:673   AACUCAGGGCUUGUUCGGUUA   693 Target Full Sequence	1.0	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
BT068211.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ***|||||||||||||||||| targets:673   AACUCAGGGCUUGUUCGGUUA   693 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
EU963259.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ***|||||||||||||||||| targets:916   AACUCAGGGCUUGUUCGGUUA   936 Target Full Sequence	1.0	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
BT042044.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   |=||=|||*|||||||||||| targets:1273   CUUUUAGGUCUUGUUCGGUUA   1293 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds	NA	coding protein	psRNATarget
BT054015.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   |=||=|||*|||||||||||| targets:1913   CUUUUAGGUCUUGUUCGGUUA   1933 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0125C21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152333.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   |=||=|||*|||||||||||| targets:1913   CUUUUAGGUCUUGUUCGGUUA   1933 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100279312), mRNA	NA	coding protein	psRNATarget
XM_008669549.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   |=||=|||*|||||||||||| targets:1990   CUUUUAGGUCUUGUUCGGUUA   2010 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT061531.2	ncRNA:21   GGAAGU-CCCGAACAAGCCAAU   1   |||*||-||||||||||||||| targets:752   CCUCCAAGGGCUUGUUCGGUUA   773 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
BT017852.1	ncRNA:21   GG-AAGUCCCGAACAAGCCAAU   1   ||-||*|||||||||||||||| targets:842   CCAUUAAGGGCUUGUUCGGUUA   863 Target Full Sequence	3.0	Zea mays clone EL01N0511C01.c mRNA sequence	NA	coding protein	psRNATarget
EU960828.1	ncRNA:21   GG-AAGUCCCGAACAAGCCAAU   1   ||-||*|||||||||||||||| targets:899   CCAUUAAGGGCUUGUUCGGUUA   920 Target Full Sequence	3.0	Zea mays clone 228913 exosome complex exonuclease RRP41 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669845.2	ncRNA:21   GG-AAGUCCCGAACAAGCCAAU   1   ||-||*|||||||||||||||| targets:1701   CCAUUGAGGGCUUGUUCGGUUA   1722 Target Full Sequence	3.0	PREDICTED: Zea mays BcpLH protein (cl15365_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ100118.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *|*|=|||||||||||||||| targets:22   GCAUUAGGGCUUGUUCGGUUA   42 Target Full Sequence	2.0	TSA: Zea mays contig35773, mRNA sequence	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *|||=|||*|||||||||||| targets:5   ACUUUAGGCCUUGUUCGGUUA   25 Target Full Sequence	2.5	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
JB163551.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *|||=|||*|||||||||||| targets:5   ACUUUAGGCCUUGUUCGGUUA   25 Target Full Sequence	2.5	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
HI403090.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *|||=|||*|||||||||||| targets:5   ACUUUAGGCCUUGUUCGGUUA   25 Target Full Sequence	2.5	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
EU942632.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *=||*|||||||||||||||| targets:162   AUUUAAGGGCUUGUUCGGUUA   182 Target Full Sequence	1.0	Zea mays clone 1525411 mRNA sequence	NA	coding protein	psRNATarget
BT068791.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *=||*|||||||||||||||| targets:1249   AUUUAAGGGCUUGUUCGGUUA   1269 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0382D13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008659614.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *=||*|||||||||||||||| targets:92   GUUUAAGGGCUUGUUCGGUUA   112 Target Full Sequence	1.0	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA	NA	coding protein	psRNATarget
XM_008664276.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *|||=||||||*||||||||| targets:1954   GCUUUAGGGCUCGUUCGGUUA   1974 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008664275.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *|||=||||||*||||||||| targets:2047   GCUUUAGGGCUCGUUCGGUUA   2067 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008648200.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *=||*|||||||||||||||| targets:4239   AUUUAAGGGCUUGUUCGGUUA   4259 Target Full Sequence	1.0	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008648199.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *=||*|||||||||||||||| targets:4244   AUUUAAGGGCUUGUUCGGUUA   4264 Target Full Sequence	1.0	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008648198.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *=||*|||||||||||||||| targets:4336   AUUUAAGGGCUUGUUCGGUUA   4356 Target Full Sequence	1.0	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008648197.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *=||*|||||||||||||||| targets:4340   AUUUAAGGGCUUGUUCGGUUA   4360 Target Full Sequence	1.0	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403092.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||*|*|||||||||||||||| targets:5   CCGUAAGGGCUUGUUCGGUUA   25 Target Full Sequence	2.0	Sequence 1217 from Patent EP2074227	NA	coding protein	psRNATarget
JB163553.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||*|*|||||||||||||||| targets:5   CCGUAAGGGCUUGUUCGGUUA   25 Target Full Sequence	2.0	Sequence 1217 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235222.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||*|*|||||||||||||||| targets:5   CCGUAAGGGCUUGUUCGGUUA   25 Target Full Sequence	2.0	Sequence 1217 from Patent EP2985353	NA	coding protein	psRNATarget
BT085445.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||*||||||||||||||*||| targets:83   CCCUCAGGGCUUGUUCGUUUA   103 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0014B16 mRNA, complete cds	NA	coding protein	psRNATarget
BT069310.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||*||||||||||||||*||| targets:223   CCCUCAGGGCUUGUUCGUUUA   243 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0070M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT040208.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   |**|=|||||||||||||||| targets:1271   CAGUUAGGGCUUGUUCGGUUA   1291 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0071O17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539702.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ***|=|||||||||||||||| targets:2458   AGAUUAGGGCUUGUUCGGUUA   2478 Target Full Sequence	2.0	PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103628995), mRNA	NA	coding protein	psRNATarget
XM_020547641.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   ||||||*|||||*|||||||| targets:3067   CCUUCAUGGCUUAUUCGGUUA   3087 Target Full Sequence	2.5	PREDICTED: Zea mays U11/U12 small nuclear ribonucleoprotein 48 kDa protein (LOC100279189), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI405886.1	ncRNA:19   AAGUCCCGAACAAGCCAAU   1   ||*|||||||||||||||| targets:1   UUAAGGGCUUGUUCGGUUA   19 Target Full Sequence	1.0	Sequence 4011 from Patent EP2074227	NA	coding protein	psRNATarget
JB166347.1	ncRNA:19   AAGUCCCGAACAAGCCAAU   1   ||*|||||||||||||||| targets:1   UUAAGGGCUUGUUCGGUUA   19 Target Full Sequence	1.0	Sequence 4011 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238016.1	ncRNA:19   AAGUCCCGAACAAGCCAAU   1   ||*|||||||||||||||| targets:1   UUAAGGGCUUGUUCGGUUA   19 Target Full Sequence	1.0	Sequence 4011 from Patent EP2985353	NA	coding protein	psRNATarget
HI407138.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   =*||*|||||||||||||||| targets:8   UAUUAAGGGCUUGUUCGGUUA   28 Target Full Sequence	1.0	Sequence 5263 from Patent EP2074227	NA	coding protein	psRNATarget
JB167599.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   =*||*|||||||||||||||| targets:8   UAUUAAGGGCUUGUUCGGUUA   28 Target Full Sequence	1.0	Sequence 5263 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239268.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   =*||*|||||||||||||||| targets:8   UAUUAAGGGCUUGUUCGGUUA   28 Target Full Sequence	1.0	Sequence 5263 from Patent EP2985353	NA	coding protein	psRNATarget
EU944907.1	ncRNA:21   GGAAG---UCCCGAACAAGCCAAU   1   **|||---|||||||||||||||| targets:242   AAUUCCUAAGGGCUUGUUCGGUUA   265 Target Full Sequence	3.0	Zea mays clone 235115 mRNA sequence	NA	coding protein	psRNATarget
EU972476.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *|||*|||||||||||||||* targets:333   ACUUGAGGGCUUGUUCGGUUU   353 Target Full Sequence	2.0	Zea mays clone 381935 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU942557.1	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   =||-|*|||||||||||||||| targets:473   UCUCUAAGGGCUUGUUCGGUUA   494 Target Full Sequence	3.0	Zea mays clone 1517970 mRNA sequence	NA	coding protein	psRNATarget
EU948930.1	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   |=|-|*|||||||||||||||| targets:311   CUUGUAAGGGCUUGUUCGGUUA   332 Target Full Sequence	3.0	Zea mays clone 390579 mRNA sequence	NA	coding protein	psRNATarget
XM_020546135.1	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   |=|-|*|||||||||||||||| targets:3023   CUUGUAAGGGCUUGUUCGGUUA   3044 Target Full Sequence	3.0	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546136.1	ncRNA:21   GGA-AGUCCCGAACAAGCCAAU   1   |=|-|*|||||||||||||||| targets:3170   CUUGUAAGGGCUUGUUCGGUUA   3191 Target Full Sequence	3.0	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB163466.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *=||=|||*|||||||||||| targets:5   AUUUUAGGCCUUGUUCGGUUA   25 Target Full Sequence	2.5	Sequence 1130 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235135.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *=||=|||*|||||||||||| targets:5   AUUUUAGGCCUUGUUCGGUUA   25 Target Full Sequence	2.5	Sequence 1130 from Patent EP2985353	NA	coding protein	psRNATarget
HI403005.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *=||=|||*|||||||||||| targets:5   AUUUUAGGCCUUGUUCGGUUA   25 Target Full Sequence	2.5	Sequence 1130 from Patent EP2074227	NA	coding protein	psRNATarget
AY104167.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *=||=|||*|||||||||||| targets:1387   AUUUUAGGCCUUGUUCGGUUA   1407 Target Full Sequence	2.5	Zea mays PCO062696 mRNA sequence	NA	coding protein	psRNATarget
NM_001148918.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *=||=|||*|||||||||||| targets:1373   AUUUUAGGCCUUGUUCGGUUA   1393 Target Full Sequence	2.5	Zea mays nodulation homolog 1 (znod1), mRNA	NA	coding protein	psRNATarget
BT043378.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   *=||=|||*|||||||||||| targets:1373   AUUUUAGGCCUUGUUCGGUUA   1393 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds	NA	coding protein	psRNATarget
BT086611.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   |*||=|||*|||||||||||| targets:1047   CAUUUAGGCCUUGUUCGGUUA   1067 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0191G08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196567.2	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   |*||=|||*|||||||||||| targets:1111   CAUUUAGGCCUUGUUCGGUUA   1131 Target Full Sequence	2.5	Zea mays resistance to phytophthora 1 (LOC100501929), mRNA	NA	coding protein	psRNATarget
XM_020542872.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   =|||**||||||||||||||| targets:1261   UCUUGCGGGCUUGUUCGGUUA   1281 Target Full Sequence	2.0	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (LOC103634808), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU961775.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   |=||*|||||*|||||||||| targets:1075   CUUUAAGGGCAUGUUCGGUUA   1095 Target Full Sequence	2.5	Zea mays clone 238196 6b-interacting protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155558.1	ncRNA:21   GGAAGUCCCGAACAAGCCAAU   1   |=||*|||||*|||||||||| targets:1075   CUUUAAGGGCAUGUUCGGUUA   1095 Target Full Sequence	2.5	Zea mays 6b-interacting protein 1 (LOC100282650), mRNA	NA	coding protein	psRNATarget