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BaseInfo

ncRNA ID	osa-miR5525
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:3904312-3904519 [-]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	177 - UGAACCUUGGGAGCGAUCUGAA - 198
Stem-loop(if miRNA)	-     ACAA    -   --- UG    C        AC      ------CUUGUUC      AAAUAGUCAUGAAUGCGGCCCCAAUGUGUUCCAUGAGAUUGAUCC  GAUGU    GUGA ACC   U  GGAG GAUCUGAA  GAAUUC             UCAUGA                                             A  |||||    |||| |||   |  |||| ||||||||  ||||||             ||||||                                             U  UUACG    CACU UGG   G  UUUU CUAGGCUU  UUUAAG             UGUUGG                                             C U     ACGA    C   UUU GU    U        --      UAAAACCUCCUUC      AAAACCACAGCCGUACCUAUUUACAAAGAAAAUUACGCCAUUUCC
Stem-loop sequence	GAUGUACAAGUGAACCUUGGGAGCGAUCUGAAACGAAUUCCUUGUUCUCAUGAAAAUAGUCAUGAAUGCGGCCCCAAUGUGUUCCAUGAGAUUGAUCCAUCCCUUUACCGCAUUAAAAGAAACAUUUAUCCAUGCCGACACCAAAAGGUUGUCUUCCUCCAAAAUGAAUUUUUCGGAUCUUUUUUGGUUUGGUCUCACAGCAGCAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK287997.1	ncRNA:22   AAGUCUAGCGAGGGUUCCAAGU   1   *|||||||||||||||*||||| targets:211   AUCAGAUCGCUCCCAAAGUUCA   232 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075104A17, full insert sequence	NA	coding protein	psRNATarget
XM_015763796.1	ncRNA:22   AAGUCUAGCGAGGGUUCCAAGU   1   *|||||||||||||||*||||| targets:546   AUCAGAUCGCUCCCAAAGUUCA   567 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9267962 (LOC9267962), mRNA	uncharacterized LOC9267962(LOC9267962)	coding protein	psRNATarget
XM_015762976.1	ncRNA:22   AAGUCUAGCGAGGGUUCCAAGU   1   *|||||||||||||||*||||| targets:1003   AUCAGAUCGCUCCCAAAGUUCA   1024 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disheveled-associated activator of morphogenesis 1 (LOC4351616), mRNA	disheveled-associated activator of morphogenesis 1(LOC4351616)	coding protein	psRNATarget
XM_015764496.1	ncRNA:22   AAGUCUAGCGAGGGUUCCAAGU   1   *|||||||||||||||*||||| targets:3413   AUCAGAUCGCUCCCAAAGUUCA   3434 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group cleavage and polyadenylation specificity factor subunit 7 (LOC9272305), mRNA	cleavage and polyadenylation specificity factor subunit 7(LOC9272305)	coding protein	psRNATarget
AK064574.1	ncRNA:22   AAGUCUAGCGAGGGUUCCAAGU   1   |||||||*|||*|||||||||| targets:1166   UUCAGAUGGCUGCCAAGGUUCA   1187 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-112-E04, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).