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BaseInfo

ncRNA ID	novel_zma_miR3447
Species	Zea mays
Class	miRNA
Genome position	Chr2:172237203-172237339 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	114 - UUGGAUCUAGAUCUAACGGAUCAA - 137
Stem-loop(if miRNA)	-- GC  A      U          CCAUAG       CGUA        --G   G        -AAA   C   G  CC UUAGAU CUGGAUUCAA      AUGCCAU    GUUUGUUA   AGG UUUUUUAU    GCU A   |  || |||||| ||||||||||      |||||||    ||||||||   ||| ||||||||    ||| U   C  GG AAUCUA GAUCUAGGUU      UACGGUA    UAAAUAGU   UUU AGAAGGUA    CGG G AA UA  C      -          --CAUA       ----        GAA   G        GUAA   A
Stem-loop sequence	GGCCCAUUAGAUUCUGGAUUCAACCAUAGAUGCCAUCGUAGUUUGUUAGAGGGUUUUUUAUAAAGCUCAUGAGGCAAUGAUGGAAGAGUUUAAGUGAUAAAUAUGGCAUAUACUUGGAUCUAGAUCUAACGGAUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170558.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||||||||||||||||||||||| targets:52   UUGAUCCGUUAGAUCUAGAUCCAA   75 Target Full Sequence	0.0	Sequence 8222 from Patent EP2559767	NA	coding protein	psRNATarget
HI410097.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||||||||||||||||||||||| targets:52   UUGAUCCGUUAGAUCUAGAUCCAA   75 Target Full Sequence	0.0	Sequence 8222 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242227.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||||||||||||||||||||||| targets:52   UUGAUCCGUUAGAUCUAGAUCCAA   75 Target Full Sequence	0.0	Sequence 8222 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020543506.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||||||||||||||||||||||| targets:679   UUGAUCCGUUAGAUCUAGAUCCAA   702 Target Full Sequence	0.0	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100216754), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU956751.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||||||||||||||||||||||| targets:861   UUGAUCCGUUAGAUCUAGAUCCAA   884 Target Full Sequence	0.0	Zea mays clone 1572581 mRNA sequence	NA	coding protein	psRNATarget
JB163419.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||=|=|||||||||||||||||= targets:10   UUGGUUCGUUAGAUCUAGAUCCAG   33 Target Full Sequence	2.0	Sequence 1083 from Patent EP2559767	NA	coding protein	psRNATarget
JB163412.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||=|=|||||||||||||||||= targets:10   UUGGUUCGUUAGAUCUAGAUCCAG   33 Target Full Sequence	2.0	Sequence 1076 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235081.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||=|=|||||||||||||||||= targets:10   UUGGUUCGUUAGAUCUAGAUCCAG   33 Target Full Sequence	2.0	Sequence 1076 from Patent EP2985353	NA	coding protein	psRNATarget
HI402958.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||=|=|||||||||||||||||= targets:10   UUGGUUCGUUAGAUCUAGAUCCAG   33 Target Full Sequence	2.0	Sequence 1083 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235088.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||=|=|||||||||||||||||= targets:10   UUGGUUCGUUAGAUCUAGAUCCAG   33 Target Full Sequence	2.0	Sequence 1083 from Patent EP2985353	NA	coding protein	psRNATarget
HI402951.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||=|=|||||||||||||||||= targets:10   UUGGUUCGUUAGAUCUAGAUCCAG   33 Target Full Sequence	2.0	Sequence 1076 from Patent EP2074227	NA	coding protein	psRNATarget
EU940990.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   *||=*|=*||=||||||||||||| targets:889   AUGGACUAUUGGAUCUAGAUCCAA   912 Target Full Sequence	3.0	Zea mays clone 1234117 mRNA sequence	NA	coding protein	psRNATarget
XM_008647143.2	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   **|=*||||*||||||||||||=| targets:3855   CGGGGCCGUCAGAUCUAGAUCCGA   3878 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626782 (LOC103626782), mRNA	NA	coding protein	psRNATarget