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BaseInfo

ncRNA ID novel_zma_miR3446
Species Zea mays
Class miRNA
Genome position Chr9:76362288-76362415 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 1 - CAGAUCUAGUGUGAUAGAGCCACU - 24
Stem-loop(if miRNA) --CA      G        ---   C      --------------------------------CCA   UCAAAUUCCACA
    GAUCUA UGUGAUAG   AGC ACUUAA                                   GGA            A
    |||||| ||||||||   ||| ||||||                                   |||            U
    CUAGAU ACAUUAUU   UCG UGAAUU                                   GAG            C
GAGG      -        AAG   -      AAACUCCAAGGACAAAAUAACAUAAAGAAGACACU   UGGAAGCUCACU
Stem-loop sequence CAGAUCUAGUGUGAUAGAGCCACUUAACCAGGAUCAAAUUCCACAAUCUCACUCGAAGGUGAGUCACAGAAGAAAUACAAUAAAACAGGAACCUCAAAUUAAGUGCUGAAUUAUUACAUAGAUCGGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU948674.1
ncRNA:24   UCACCGAGAUAGUGUGAUCUAGAC   1
  |||||||||||||*||||||||||
targets:427   AGUGGCUCUAUCAGACUAGAUCUG   450

1.5 Zea mays clone 381761 mRNA sequence NA coding protein psRNATarget