Search result

BaseInfo

ncRNA ID novel_zma_miR3445
Species Zea mays
Class miRNA
Genome position Chr2:130866763-130866849 [+]
Reference genome RefGen_v4
Source SRR2089715
Length 24
Mature sequence(if miRNA) 64 - UGGACUGUCCGGUGUGCACCGGAA - 87
Stem-loop(if miRNA) --      UG        ---U   --- GCACAGAGGGACCCACA
  CCGGUG  CACCGGAC    GUC   U                 G
  ||||||  ||||||||    |||   |                 A
  GGCCAC  GUGGCCUG    GUC   A                 C
AA      GU        UCAG   ACG CGUCGGGUUCCCACGUA
Stem-loop sequence CCGGUGUGCACCGGACUGUCUGCACAGAGGGACCCACAGACAUGCACCCUUGGGCUGCAGCACUGGACUGUCCGGUGUGCACCGGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ242178.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:106   GUCCGGUGCACACCGGACAGUCCG   129

1.0 Sequence 8173 from Patent EP2985353 NA coding protein psRNATarget
JB170509.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:106   GUCCGGUGCACACCGGACAGUCCG   129

1.0 Sequence 8173 from Patent EP2559767 NA coding protein psRNATarget
HI410048.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:106   GUCCGGUGCACACCGGACAGUCCG   129

1.0 Sequence 8173 from Patent EP2074227 NA coding protein psRNATarget
BT068112.2
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:467   GUCCGGUGCACACCGGACAGUCCG   490

1.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT068112.2
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:597   GUCCGGUGCACACCGGACAGUCCG   620

1.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:739   GUCCGGUGCACACCGGACAGUCCG   762

1.0 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:619   GUCCGGUGCACACCGGACAGUCCG   642

1.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:733   GUCCGGUGCACACCGGACAGUCCG   756

1.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:836   GUCCGGUGCACACCGGACAGUCCG   859

1.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
BT061141.2
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:619   GUCCGGUGCACACCGGACAGUCCG   642

1.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:733   GUCCGGUGCACACCGGACAGUCCG   756

1.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:836   GUCCGGUGCACACCGGACAGUCCG   859

1.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:711   GUCCGGUGCACACCGGACAGUCCG   734

1.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:711   GUCCGGUGCACACCGGACAGUCCG   734

1.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
BT061123.2
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:280   GUCCGGUGCACACCGGACAGUCCG   303

1.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:596   GUCCGGUGCACACCGGACAGUCCG   619

1.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:694   GUCCGGUGCACACCGGACAGUCCG   717

1.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
BT066811.2
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:596   GUCCGGUGCACACCGGACAGUCCG   619

1.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:694   GUCCGGUGCACACCGGACAGUCCG   717

1.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:444   GUCCGGUGCACACCGGACAGUCCG   467

1.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:558   GUCCGGUGCACACCGGACAGUCCG   581

1.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
BT061124.2
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:444   GUCCGGUGCACACCGGACAGUCCG   467

1.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
BT061124.2
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:558   GUCCGGUGCACACCGGACAGUCCG   581

1.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
EU940831.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:406   GUCCGGUGCACACCGGACAGUCCG   429

1.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
EU940831.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *|*||||||||||||||||||||=
targets:292   GUACGGUGCACACCGGACAGUCCG   315

1.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
EU940845.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:1396   GUCCGGUGCACACCGGACAGUCCG   1419

1.0 Zea mays clone 1163633 mRNA sequence NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:4491   GUCCGGUGCACACCGGACAGUCCG   4514

1.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||||||||||||=
targets:4606   GUCCGGUGCACACCGGACAGUCCG   4629

1.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
LQ241481.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *|||||||=||||||||||||||=
targets:27   GUCCGGUGUACACCGGACAGUCCG   50

2.0 Sequence 7476 from Patent EP2985353 NA coding protein psRNATarget
JB169812.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *|||||||=||||||||||||||=
targets:27   GUCCGGUGUACACCGGACAGUCCG   50

2.0 Sequence 7476 from Patent EP2559767 NA coding protein psRNATarget
HI409351.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *|||||||=||||||||||||||=
targets:27   GUCCGGUGUACACCGGACAGUCCG   50

2.0 Sequence 7476 from Patent EP2074227 NA coding protein psRNATarget
LQ241238.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *|||||||=||||||||||||||=
targets:114   GUCCGGUGUACACCGGACAGUCCG   137

2.0 Sequence 7233 from Patent EP2985353 NA coding protein psRNATarget
HI409108.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *|||||||=||||||||||||||=
targets:114   GUCCGGUGUACACCGGACAGUCCG   137

2.0 Sequence 7233 from Patent EP2074227 NA coding protein psRNATarget
JB169569.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *|||||||=||||||||||||||=
targets:114   GUCCGGUGUACACCGGACAGUCCG   137

2.0 Sequence 7233 from Patent EP2559767 NA coding protein psRNATarget
BT086229.2
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||=|||||||||=
targets:530   GUCCGGUGCACACUGGACAGUCCG   553

2.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
EU940974.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *||||||||||||=|||||||||=
targets:2652   GUCCGGUGCACACUGGACAGUCCG   2675

2.5 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
EU940974.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *|||||||||||||||||||||==
targets:2766   GUCCGGUGCACACCGGACAGUCUG   2789

2.5 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
EU950973.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *|||||||==|||||||||||||=
targets:179   GUCCGGUGUGCACCGGACAGUCCG   202

3.0 Zea mays clone 677173 mRNA sequence NA coding protein psRNATarget
EZ106959.1
ncRNA:24   AAGGCCAC-GUGUGGCCUGUCAGGU   1
  *|||||||-|||||||||||||||=
targets:91   GUCCGGUGGCACACCGGACAGUCCG   115

3.0 TSA: Zea mays contig42617, mRNA sequence NA coding protein psRNATarget
BT083610.2
ncRNA:24   AAGGCCAC-GUGUGGCCUGUCAGGU   1
  *|||||||-|||||||||||||||=
targets:794   GUCCGGUGGCACACCGGACAGUCCG   818

3.0 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT066461.2
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *|||||||||||||||*||||||=
targets:608   GUCCGGUGCACACCGGUCAGUCCG   631

2.5 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
LQ241966.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *|||||||||||||||||*||||=
targets:32   GUCCGGUGCACACCGGACUGUCCG   55

2.5 Sequence 7961 from Patent EP2985353 NA coding protein psRNATarget
JB170297.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *|||||||||||||||||*||||=
targets:32   GUCCGGUGCACACCGGACUGUCCG   55

2.5 Sequence 7961 from Patent EP2559767 NA coding protein psRNATarget
HI409836.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *|||||||||||||||||*||||=
targets:32   GUCCGGUGCACACCGGACUGUCCG   55

2.5 Sequence 7961 from Patent EP2074227 NA coding protein psRNATarget
BT016820.1
ncRNA:24   AAGGCCACGUGUGGCCUGUCAGGU   1
  *|||||||||||||||||*||||=
targets:200   GUCCGGUGCACACCGGACUGUCCG   223

2.5 Zea mays clone Contig653 mRNA sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.