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BaseInfo

ncRNA ID novel_zma_miR3444
Species Zea mays
Class miRNA
Genome position Chr2:126038639-126038728 [+]
Reference genome RefGen_v4
Source SRR2089715;SRR1997865
Length 24
Mature sequence(if miRNA) 1 - ACUUGUCGAGUGAUUAUGUGCAUU - 24
Stem-loop(if miRNA) --    GU    UG    U  G        U   U    GAG    
  ACUU  CGAG  AUUA GU CAUUUACA GGU GUCU   GUCCU
  ||||  ||||  |||| || |||||||| ||| ||||   ||||U
  UGGA  GUUC  UAAU CG GUGGAUGU CUA CAGG   CAGGA
CU    UG    CA    C  G        -   -    -AA    
Stem-loop sequence ACUUGUCGAGUGAUUAUGUGCAUUUACAUGGUUGUCUGAGGUCCUUAGGACAAGGACAUCUGUAGGUGGGCCUAAUACCUUGGUAGGUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ106947.1
ncRNA:24   UUACGUGUAUUAGUGAGCUGUUCA   1
  ||||||||||||||||=|||||||
targets:217   AAUGCACAUAAUCACUUGACAAGU   240

1.5 TSA: Zea mays contig42605, mRNA sequence NA coding protein psRNATarget
EU943317.1
ncRNA:24   UUACGUGUAUUAGUGAGCUGUUCA   1
  =||||||||||||||||||=||||
targets:866   GAUGCACAUAAUCACUCGAUAAGU   889

1.5 Zea mays clone 1597341 mRNA sequence NA coding protein psRNATarget